View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_6 (Length: 360)
Name: NF6441_low_6
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 29663390 - 29663057
Alignment:
| Q |
18 |
tattttaattcagatgatgggtactcaaagagggcgttcattatagaagaaagcaagaatattaagttaacagtgtatagaataacacataaaatatcag |
117 |
Q |
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| T |
29663390 |
tattttaattcagatgatgggtactcaaagagggcgttcattatagaagaaagcaagaatattaagttaatagtgtatagaataacacataaaatatcag |
29663291 |
T |
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| Q |
118 |
gacagtagtaggcatatagaacatagattatttacagactaaaccccatgcattaatttgattaatggtttccatgatttggactaagaaagcaaaacag |
217 |
Q |
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| T |
29663290 |
gacagtagtaggcatatagaacatagattatttacagactaaaccccatgcattaatttgattaatggtttccatgatttggactaagaaagcaaaacag |
29663191 |
T |
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| Q |
218 |
tgaaatcctacaccaaaatgtggttttgatttcacaatgaaacctaacctaagaagaaatagtagtagctacatatcaggggatgaaattggtcccagat |
317 |
Q |
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| T |
29663190 |
tgaaatcctacaccaaaatgtggttttgatttcacaatgaaacctaacctaagaagaaatagtagtagctacatatcaggggatgaaattgatcccagat |
29663091 |
T |
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| Q |
318 |
aatccccttccaagccatgaaactccctctctgc |
351 |
Q |
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| T |
29663090 |
aatccccttccaagccatgaaactccctctctgc |
29663057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 33201324 - 33201374
Alignment:
| Q |
284 |
agctacatatcaggggatgaaattggtcccagataatccccttccaagcca |
334 |
Q |
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| T |
33201324 |
agctacatatcaggggatgaaattggtcctagataatccccttccaagcca |
33201374 |
T |
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