View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6441_low_7 (Length: 329)
Name: NF6441_low_7
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 52809408 - 52809666
Alignment:
| Q |
1 |
aacctatccatgtgccctttgtttaggttctctggaatccatcctttgtcattccctcttgcagtgattttcatgaccacgtgaacaagcatgctactca |
100 |
Q |
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| T |
52809408 |
aacctatccatgtgccctttgtttaggttctctggaatccaacctttgtcattccctcttgcagtgattttcatgaccacgtgaacaagcatgctactca |
52809507 |
T |
|
| Q |
101 |
catagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgacccacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |
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| T |
52809508 |
catagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaattgacccacata |
52809607 |
T |
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| Q |
201 |
cataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatatactca |
259 |
Q |
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||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52809608 |
catgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
52809666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 3802856 - 3803079
Alignment:
| Q |
90 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
189 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3802856 |
catgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
3802955 |
T |
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| Q |
190 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatatactcaaggaactagccttctcttccggcttaacat |
289 |
Q |
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| T |
3802956 |
tgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaatttgatagaatatactcaaagaactagccttctcttccggcttaacat |
3803055 |
T |
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| Q |
290 |
gtttaagccgtacaaactctgttg |
313 |
Q |
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|||||||||||||||||||||||| |
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| T |
3803056 |
gtttaagccgtacaaactctgttg |
3803079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 397928 - 397758
Alignment:
| Q |
90 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
189 |
Q |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
397928 |
catgctgctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
397829 |
T |
|
| Q |
190 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatatactcaa |
260 |
Q |
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| T |
397828 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactcaa |
397758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 2745916 - 2745785
Alignment:
| Q |
84 |
aacaagcatgctactcacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaac |
183 |
Q |
| |
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|||||||| |||||| ||||||||||| | || ||||||| ||||||||||| ||||||||||||||| | ||||| || || || |||||| ||| |
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| T |
2745916 |
aacaagcaagctactaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaac |
2745817 |
T |
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| Q |
184 |
tccaactgacccacatacataaaaacttctga |
215 |
Q |
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||||| ||||| |||||||| ||||||||||| |
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| T |
2745816 |
tccaattgaccaacatacatgaaaacttctga |
2745785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 4708312 - 4708425
Alignment:
| Q |
93 |
gctactcacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactga |
192 |
Q |
| |
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|||||| |||||||| ||||| ||||| || | ||| ||||||| |||||| || || |||| |||||| || | |||| ||||||||||||| ||||| |
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| T |
4708312 |
gctacttacatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgc |
4708411 |
T |
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| Q |
193 |
cccacatacataaa |
206 |
Q |
| |
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|| ||||||||||| |
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| T |
4708412 |
cctacatacataaa |
4708425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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