View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6441_low_8 (Length: 307)
Name: NF6441_low_8
Description: NF6441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6441_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 2225690 - 2225411
Alignment:
| Q |
18 |
gttaattgatggctgaaaacagtaggacgttgtaacagatcttgatcgtctgattttcaattggtggctgaaatctttttatcatataaaattgatttca |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225690 |
gttaatcgatggctgaaaacagtaggacgttgtaacagatcttgatcgtctgatcttcaattggtggctgaaatctttttatcatataaaattgatttca |
2225591 |
T |
|
| Q |
118 |
aaatcttaatcgtctggtctcatcaagaaactgcgtgttttttacagcaaggtatccgggtccaagcatacatagggtgcaaatagtgattcccctaaac |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2225590 |
aaatctaaatcgtctggtctcatcaagaaactgcatgttttttacagcagggtatccggatccaagcatacatagggtgcaaatagtgattaccctaaac |
2225491 |
T |
|
| Q |
218 |
ttacccaacatccaatagaagtccaatacacttaaacgacgccgtattgtaacaaagcagacaacctcctttgtttcatc |
297 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2225490 |
ttacccaacatcccatagaagtccaaaacacttaaacgacgccgtattgtaacaaagcagacaacctcctttgtttcatc |
2225411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University