View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_high_1 (Length: 630)
Name: NF6442_high_1
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 187 - 614
Target Start/End: Complemental strand, 43602310 - 43601883
Alignment:
| Q |
187 |
aatacaaacacatgctgagtgttggcatcaataataattttaaagatgaaagtaattgaatggaacccatgcatcagtgtacgacactaacacatgtcag |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602310 |
aatacaaacacatgctgagtgttggcatcaataataattttaaagatgaaagtaattgaatggaacccatgcatcagtgtacgacactaacacatgtcag |
43602211 |
T |
|
| Q |
287 |
acattagacacatattcaatgtgaaatctccgtacatatgtatgcgcaattctctagctaaaggtaaaggcaatcaa-taacttcagcagaagaagacta |
385 |
Q |
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| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43602210 |
atattagacacatattcaatgtgaaatctcggtacatatgtatgcgcaattctctagctaaaggtaaaggcaatcaactaacttcagcagaagaagacta |
43602111 |
T |
|
| Q |
386 |
atttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgtgtcaccaaatttttctaccctggttaagttaagtggataacaattcta |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43602110 |
atttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgt-tcaccaaatttttctaccctggttaagttaagtggataacgattcta |
43602012 |
T |
|
| Q |
486 |
taaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgtt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602011 |
taaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgtt |
43601912 |
T |
|
| Q |
586 |
ttggtgcagaaataattttcataatttga |
614 |
Q |
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| T |
43601911 |
ttggtgcagaaataattttcataatttga |
43601883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 43602673 - 43602495
Alignment:
| Q |
17 |
caaaatcttcccaattctttggtcttcctgctagaattgcactcgcttttgatatccatggcagctgctagtgaaataagtaaactcatgagaagtgact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43602673 |
caaaatcttcccaattctttggtcttcctgctagaattgcactcgcttttgatatccatggcagctgctagtgaaataagtaaactgatgagaagtgact |
43602574 |
T |
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| Q |
117 |
aaacttgagaatacaagcacatgctattgcttttgatataagagtgtctactcttggcctatatagcactaatacaaac |
195 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602573 |
aaacttgagaatacaagcacatgctattgcatttgatataagagtgtctactcttggcctatatagcactaatacaaac |
43602495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 503 - 612
Target Start/End: Original strand, 22436220 - 22436329
Alignment:
| Q |
503 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
602 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
|
| Q |
603 |
ttcataattt |
612 |
Q |
| |
|
|||||||||| |
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| T |
22436320 |
ttcataattt |
22436329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 572 - 612
Target Start/End: Original strand, 22239084 - 22239124
Alignment:
| Q |
572 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
612 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
22239124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 572 - 612
Target Start/End: Original strand, 37560602 - 37560642
Alignment:
| Q |
572 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
612 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
37560642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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