View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_high_2 (Length: 603)
Name: NF6442_high_2
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 250 - 589
Target Start/End: Complemental strand, 24716638 - 24716296
Alignment:
| Q |
250 |
attacacatttttcgatcatttctgaatcaaatctcacacactgaa---aaatgaacaacttattcaccggttcattttctcgcttccgtagcgaagaag |
346 |
Q |
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| T |
24716638 |
attacacatttttcgatcatttctgaatcaaatctcacacactgaagaaaaatgaacaacttattcaccggttcattttctcgcttccgtagcgaagaag |
24716539 |
T |
|
| Q |
347 |
tttcaccggaccggcaccacgtcatcgagatgacagacggtgccggaaccagaaccggagcaggagctggaggtagaataaacctcgacaaattcttcga |
446 |
Q |
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| T |
24716538 |
tttcaccggaccggcaccacgtcatcgagatgacagacggtgccggaaccagaaccggagcaggagcaggaggtagaataaaccttgacaaattcttcga |
24716439 |
T |
|
| Q |
447 |
cgatgtcgaaggagtaaaagatgatctaaaagagctagaatcaatccaccaacgactttcaaagactaacgaacagacgaaaacggttcacgatgctaaa |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716438 |
cgatgtcgaaggagtaaaagatgatctaaaagagctagaatcaatccaccaacgactttcaaagactaacgaacagacgaaaacggttcacgatgctaaa |
24716339 |
T |
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| Q |
547 |
ggagtgaaggagcttcgttcacgtatggacgaagaagtttctg |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716338 |
ggagtgaaggagcttcgttcacgtatggacgaagaagtttctg |
24716296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 24716870 - 24716666
Alignment:
| Q |
26 |
acagcacaatcaaaactacaaatcagtaaaatcattaatcagaccaatcaacgcgcttctgtccttcaatgtttgaaccaatccgaagtttcttgtttta |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716870 |
acagcacaatcaaaactacaaatcagtaaaatcattaatcagaccaatcaacgcgcttctgtccttcaatgtttgaaccaatccgaagtttcttgtttta |
24716771 |
T |
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| Q |
126 |
aaccaaacacgccacac----gcacttacgcggtattatcctctacattccaccccattctctttatcctactccatcattttaaatatccattgacttc |
221 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716770 |
aaccaaacacgccacacgcacgcacgcacgcggtattatcctctacattccaccccattctctttatcctactccatcattttaaatatccattgacttc |
24716671 |
T |
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| Q |
222 |
aaaac |
226 |
Q |
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||||| |
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| T |
24716670 |
aaaac |
24716666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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