View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_high_7 (Length: 348)
Name: NF6442_high_7
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4822839 - 4823149
Alignment:
| Q |
1 |
caatgagaaattgagttagtctacgtcatcatcatgtagtgctgaaatgtctaacaagtgggaccaatccagatagatcgcttgcaaagtgtcaaaagtt |
100 |
Q |
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| T |
4822839 |
caatgagaaattgagttagtctacgtcatcatcatgtagtgctgaaatgtctaacaagtgggaccaatccagatagatcgcttgagaagtgtcaaaagtt |
4822938 |
T |
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| Q |
101 |
agacgaaagggaatgcatgtacttttgttttgcataatatatgtgtgtgaaagaaagaaagaaagaataaacttgattcttctggtgaaaatgatactct |
200 |
Q |
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| T |
4822939 |
agtcgaaagggaatgcatgtacttttgttttgcataatatatgtgtgtgaaagaaagaaagaaagaataaacttgattcttctggtgaaaatgatactct |
4823038 |
T |
|
| Q |
201 |
ctttctattttattttcaaaatttcatatacaagtgcctgattagcattaatgtctttcctatcaagctaattaggactcgtttggtagtcaacaacaat |
300 |
Q |
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| T |
4823039 |
ccttctattctattttcaaaatttcatatacaagtgcctgattagcattaatgtctttcctatcaagctaattagaactcgtttggtagtcaacaacaat |
4823138 |
T |
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| Q |
301 |
atcaatatttt |
311 |
Q |
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||||||||||| |
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| T |
4823139 |
atcaatatttt |
4823149 |
T |
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