View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_low_3 (Length: 492)
Name: NF6442_low_3
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 22 - 482
Target Start/End: Complemental strand, 45224515 - 45224055
Alignment:
| Q |
22 |
acaccaccttccttcacagccaaaaccctcatactctcatcctccgaaatcaaattcgccacacaaccaatggcattctctcgcgccaaccccgttccag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45224515 |
acaccaccttccttcacagccaaaaccctcatactctcatcctccgaaatcaaattcgccacacaaccaatggcattctctcgcgccaaccccgtcccag |
45224416 |
T |
|
| Q |
122 |
acgaagccagccctaacaaaacaataaccgcattctcctccacaaaattctccttaatttcattaaattttgccagattcctcaaaaccgcggccgcata |
221 |
Q |
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| T |
45224415 |
acgaagccagccctaacaaaacaataaccgcattctcctccacaaaattctccttaatttcattaaattttgccagattcctcaaaaccgcggccgcata |
45224316 |
T |
|
| Q |
222 |
accttgcgaacctggcgttccaccttgacaaatccctaacagagacgaaattccacctctagatccaatcgctctagcattatctctactcaaactcaac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224315 |
accttgcgaacctggcgttccaccttgacaaatccctaacagagacgaaattccacctctagatccaatcgctctagcattatctctactcaaactcaac |
45224216 |
T |
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| Q |
322 |
gcctgaagcgcaatacaagctttctctatcgctaaaccacttcccgaatccaaaaccctaaccaaatgattcaacaacaacaaaccctccgcaagtaaat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224215 |
gcctgaagcgcaatacaagctttctctatcgctaaaccacttcccgaatccaaaaccctaaccaaatgattcaacaacaacaaaccctccgcaagtaaat |
45224116 |
T |
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| Q |
422 |
tattcttcccactctctaccgtcgaaactctcgaaatagcagcaactgttttctccttcat |
482 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224115 |
tattcttcccactctccaccgtcgaaactctcgaaatagcagcaactgttttctccttcat |
45224055 |
T |
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