View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_low_4 (Length: 424)
Name: NF6442_low_4
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 17129870 - 17130137
Alignment:
| Q |
23 |
aatctacttaactaattagtgtgttacaagaacaatgttcatgcaaatattcaaaccaatatattcattagacgatagaggactaagatgacatatttca |
122 |
Q |
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| T |
17129870 |
aatctacttaactaattagtgtgttacaagaacaatgttcatgcaaatattcaaaccaatatattcattagacgatagagcactaagatgacatatttca |
17129969 |
T |
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| Q |
123 |
aagcaacaatggtcgagagatatagagcaagagcacgatcaatatcagnnnnnnnnnnnnnnnnnnnnngaactccgacaagcacaatggaagtgatcga |
222 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
17129970 |
aagcaacaatggtcgagagatatagagtaaaagcacgatcaatatcggaaaaaataggcaaacaaaaaagaactccaacaagcacaatggaagtgatcga |
17130069 |
T |
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| Q |
223 |
gaccagttacatctcctccattactatcagtcgcacaaccagtatgcgataaattaaatactagcaaa |
290 |
Q |
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| T |
17130070 |
gaccagttacatctcctccattactatcagtcgcacaaccagtatgcaataaattaaatactagcaaa |
17130137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 17165435 - 17165709
Alignment:
| Q |
4 |
agatggacatcatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgcaaatattcaaaccaatatattcattagacgatagagg |
103 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17165435 |
agattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgcaaatattcaaaccaatatattcattagacgatagagc |
17165534 |
T |
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| Q |
104 |
actaagatgacatatttcaaagcaacaatggtcgagagatatagagcaagagcacgatcaatatcagnnnnnnnnnnnnnnnnnnnnngaactccgacaa |
203 |
Q |
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| T |
17165535 |
actaagatgacatatttcaaggcaagaatgattgagagatatagagctaaagtatgatcaatatcagaaaaaataggcaaacaagaaagaactccgacaa |
17165634 |
T |
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| Q |
204 |
gcacaatggaagtgatcgagaccagttacatctcctccattactatcagtcgcac--aaccagtatgcgataaat |
276 |
Q |
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| T |
17165635 |
gcacaatggaagtgatcgagactggttaagtcttctccattactattagtcacacaaaaccagtatgcaataaat |
17165709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 19973443 - 19973526
Alignment:
| Q |
305 |
tttgaaaatctaaatgacagagtcaaaattaaacaaaggtcatgcctttgaaaaccattaaatcttagcattgcatatgttaga |
388 |
Q |
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| T |
19973443 |
tttgaaaatctaaatgacagagtcaaaatgaaacagatctcatgcctttgaaaaccattaaatcttagcattgcatatgttaga |
19973526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 19972398 - 19972447
Alignment:
| Q |
75 |
aaaccaatatattcattagacgatagaggactaagatgacatatttcaaa |
124 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19972398 |
aaaccaatatattcattagacgatagagccctaagatgacatatttcaaa |
19972447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 19971945 - 19971991
Alignment:
| Q |
18 |
aaggaaatctacttaactaattagtgtgttacaagaacaatgttcat |
64 |
Q |
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| T |
19971945 |
aaggaaatctactcacctaattagagtgttacaagaacaatgttcat |
19971991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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