View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_low_5 (Length: 400)
Name: NF6442_low_5
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 42967384 - 42967774
Alignment:
| Q |
11 |
cacagacgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacacagatgaatatttg |
110 |
Q |
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| T |
42967384 |
cacaaacgaaattttgaattgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacatagatgaatatttg |
42967483 |
T |
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| Q |
111 |
gttgaatgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaagatgccaaacaaataaatc-gagtttaagggaacatatgatta |
209 |
Q |
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| T |
42967484 |
gttgaatgatgtgtctcctaattaagttgtcggttgtaggtaatcgatttcacagaaaatgccaaacaaataaatctgagtttaagggaacatatgatta |
42967583 |
T |
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| Q |
210 |
attggctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtgaatttttcaataattacgag |
309 |
Q |
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| T |
42967584 |
attggctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtcaatttttcaataattacgag |
42967683 |
T |
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| Q |
310 |
agccttgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcatagacacacatagaacttgcatgac |
400 |
Q |
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| T |
42967684 |
agccttgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcatagacacacatagaacttgcatgac |
42967774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 39566755 - 39566638
Alignment:
| Q |
70 |
tcctccaatatacgacacctacccacacagat--gaatatttggttgaatgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaa |
167 |
Q |
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||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| | ||||| |
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| T |
39566755 |
tcctccattataccacacctacccacacaaatatgaatatttggttgaatgacgtgtctcctaattaagttgtttgttgtaggtaatcgattacgcagaa |
39566656 |
T |
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| Q |
168 |
gatgccaaacaaataaat |
185 |
Q |
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| T |
39566655 |
gacgccaaacaaataaat |
39566638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15071960 - 15071901
Alignment:
| Q |
11 |
cacagacgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagct |
70 |
Q |
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| T |
15071960 |
cacaaacgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagct |
15071901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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