View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6442_low_9 (Length: 270)
Name: NF6442_low_9
Description: NF6442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6442_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 29199369 - 29199179
Alignment:
| Q |
61 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
160 |
Q |
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| T |
29199369 |
gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga |
29199271 |
T |
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| Q |
161 |
caaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagctcaaacaaaatcagcttctcaaatt |
252 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29199270 |
gaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatt |
29199179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 19768956 - 19768832
Alignment:
| Q |
129 |
tgttatagtttcttctatagcaaaagagatgacaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
228 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19768956 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
19768857 |
T |
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| Q |
229 |
-caaacaaaatcagcttctcaaatt |
252 |
Q |
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||| ||||||||||||||||||| |
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| T |
19768856 |
aaaaaaaaaatcagcttctcaaatt |
19768832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
| Q |
61 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
160 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| || || ||||||||||||| |||||| |||||| |
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| T |
25901099 |
gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga |
25901197 |
T |
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| Q |
161 |
caaagaaacaaataaaagtggaagaaga |
188 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25901198 |
gaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
165 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
207 |
Q |
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| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 6174362 - 6174412
Alignment:
| Q |
15 |
atcatcatcacaggaaaacttttgtctctgttgaaaggcgagaaaagtgaa |
65 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
6174362 |
atcatcatcactggaaaacttttgtctctgttgaaaggtgagaaaagtgaa |
6174412 |
T |
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