View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6443_high_1 (Length: 246)
Name: NF6443_high_1
Description: NF6443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6443_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 26586231 - 26586158
Alignment:
| Q |
128 |
gacttgtaagtgaaaattcactattctgtaacttgttaatgctactcaccaacccatatacttaaagttttcaa |
201 |
Q |
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| T |
26586231 |
gacttgtaagtgaaaattcactattctgtaacttgttaatgctactcaccaacccatatacttaaagttttcaa |
26586158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26586335 - 26586297
Alignment:
| Q |
25 |
cccatcaaacaaaactactaggtactataccattgctgc |
63 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
26586335 |
cccatcaaacaaaactactaggtactatactattgctgc |
26586297 |
T |
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