View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6444_low_1 (Length: 418)
Name: NF6444_low_1
Description: NF6444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6444_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 63682 - 63275
Alignment:
| Q |
1 |
gtgtgaatatgataaggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagaca |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
63682 |
gtgtgaatatgataaggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagaca |
63583 |
T |
|
| Q |
100 |
aagataagaggtgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63582 |
aagataagaggtgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaa |
63483 |
T |
|
| Q |
200 |
aagaacacgacaaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccc----------cataacatagc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
63482 |
aagaacacgacaaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagc |
63383 |
T |
|
| Q |
290 |
-------tctattaatgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63382 |
tgatagatctattaatgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctg |
63283 |
T |
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| Q |
383 |
tctctgct |
390 |
Q |
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| T |
63282 |
tctctgct |
63275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 40909412 - 40909819
Alignment:
| Q |
1 |
gtgtgaatatgataaggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagaca |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40909412 |
gtgtgaatatgataaggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagaca |
40909511 |
T |
|
| Q |
100 |
aagataagaggtgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909512 |
aagataagaggtgcgaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaa |
40909611 |
T |
|
| Q |
200 |
aagaacacgacaaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtcc----------ccataacatagc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40909612 |
aagaacacgacaaagactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagc |
40909711 |
T |
|
| Q |
290 |
-------tctattaatgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909712 |
tgatagatctattaatgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctg |
40909811 |
T |
|
| Q |
383 |
tctctgct |
390 |
Q |
| |
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|||||||| |
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|
| T |
40909812 |
tctctgct |
40909819 |
T |
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