View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6444_low_4 (Length: 238)
Name: NF6444_low_4
Description: NF6444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6444_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37164871 - 37164650
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37164871 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
37164772 |
T |
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| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcatatccaggagaaaaaatgtcttcaaacatagtaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37164771 |
ttattattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcatatccaggagaaaaaatgtcttcaaacatagtaa |
37164672 |
T |
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| Q |
201 |
taacattttgagtagtagagaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37164671 |
taacattttgagtagtagagaa |
37164650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 37139503 - 37139335
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||| |
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| T |
37139503 |
tgataaattcaatgacaccaactctatcaagttttctatttcttctggaatgtctcctatcaattgattgcttgatagatcaatactcctcaaaatgagc |
37139404 |
T |
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| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcatat |
169 |
Q |
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| T |
37139403 |
ttattattcttgaatagccgttctgtccctttccacatcaacaatgcaatcaaatcgtagccttcatat |
37139335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 35142999 - 35143166
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
35142999 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttccggaatgtctcctgtcaatagattgcttgatagatcaatactcctcaaaatgagt |
35143098 |
T |
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| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcata |
168 |
Q |
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|||| |||||||||||||||| ||| |||||||||||| | ||||||| ||||| || |||||||| |
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| T |
35143099 |
ttattattcttgaatagtcgtgctgcacctttccacattaataatgcaaccaaatcatagccttcata |
35143166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38749087 - 38748919
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
38749087 |
tgataaattcaacgacaccaactctatcaagtttcctatttcttctggaatatttcctatcaattgattgtttgatagatcaatacttctcaaaatgagc |
38748988 |
T |
|
| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcatat |
169 |
Q |
| |
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|||| |||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
38748987 |
ttattattcttgaattatcgttctgcacctttccacatcaataatgcaaagaaatcatagccttcatat |
38748919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 37132417 - 37132278
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| || |||||||||||| |
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| T |
37132417 |
tgataaattcaatgacaccaactctatcaagtttcctatttcttctggaatgtctcctatcaattgatttcttgatagatcaatactcctcaaaatgagc |
37132318 |
T |
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| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatca |
140 |
Q |
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|||| |||||||||| | ||||| |||||||| ||||| |
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| T |
37132317 |
ttattattcttgaattgccgttccacacctttcctcatca |
37132278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3022711 - 3022879
Alignment:
| Q |
1 |
tgataaattcaatgacaccaatgctatcaagtttcctatttcttctggaaggtctcctgtcaattgattgcttgatagatcaatgcttctcaaaatgagc |
100 |
Q |
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|||||||||||| |||||||| | ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3022711 |
tgataaattcaacgacaccaactccatcaagtttcctatttcttctggaatatttcctatcaattgattgcttgatagatcaatacttctcaaaatgagc |
3022810 |
T |
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| Q |
101 |
ttatcattcttgaatagtcgttctgtacctttccacatcatcaatgcaaataaatcgtatccttcatat |
169 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
3022811 |
ttattattcttgaattgtcgttctgcacctttccacatcaacaatgcaatcaaatcatagccttcatat |
3022879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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