View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6445_high_3 (Length: 275)
Name: NF6445_high_3
Description: NF6445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6445_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 54181299 - 54181555
Alignment:
| Q |
1 |
atccaaaacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcagctgaaatacccttcttcgcaacattcaccacaaggtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54181299 |
atccaaaacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcggctgaaatacccttcttcgcaacattcaccacaaggtca |
54181398 |
T |
|
| Q |
101 |
acaactgaaacattaggtgttggcacacgaagggcgattccattgagctttcccttgagctgtggcagcactagagagacagccttggctgctcctgtgc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181399 |
acaactgaaacattaggtgttggcacacgaagggcgattccgttgagctttcccttgagctgtggcagcactagagagacagccttggctgctcctgtgc |
54181498 |
T |
|
| Q |
201 |
tggtggggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaag |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181499 |
tggtggggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaag |
54181555 |
T |
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