View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6445_low_4 (Length: 221)
Name: NF6445_low_4
Description: NF6445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6445_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 11157480 - 11157271
Alignment:
| Q |
5 |
gatggacatcatcaccactcttgaaagtttgtatctcgaacatcttccaaaactagagtttgcactatgtgaaggagttttcttacctcccaaattacaa |
104 |
Q |
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| T |
11157480 |
gatggacaccctcaccgctcttgaaagattgtatctccaccatcttccaaaactagagtttgcactatatgaaggagttttcttacctcccaaattacaa |
11157381 |
T |
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| Q |
105 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctcttacaaatttgtatattgaagata |
204 |
Q |
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| T |
11157380 |
acaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata |
11157281 |
T |
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| Q |
205 |
atgatgatgt |
214 |
Q |
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|||||||||| |
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| T |
11157280 |
atgatgatgt |
11157271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 11128478 - 11128282
Alignment:
| Q |
16 |
tcaccactcttgaaagtttgtatctcgaacatcttccaaaactagagtttgcactatgtgaaggagttttcttacctcccaaattacaaagaatttctat |
115 |
Q |
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| T |
11128478 |
tcaccactcttgaaattttgtatctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaacaatttctat |
11128379 |
T |
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| Q |
116 |
tacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctcttacaaatttgtatattgaagataatgatgat |
212 |
Q |
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| T |
11128378 |
tacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctctttcatatttgtatattaaagagaatgatgat |
11128282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 8863895 - 8864104
Alignment:
| Q |
5 |
gatggacatcatcaccactcttgaaagtttgtatctcgaacatcttccaaaactagagtttgcactatgtgaaggagttttcttacctcccaaattacaa |
104 |
Q |
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|||||||| | |||||||||||||||| ||| || || | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
8863895 |
gatggacaccctcaccactcttgaaagattgcatttctaccatcttccaaaacttgagtttgcactatatgaaggagttttcttacctcccaaattgcaa |
8863994 |
T |
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| Q |
105 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctcttacaaatttgtatattgaagata |
204 |
Q |
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| T |
8863995 |
acaatttatattacatctgtaagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata |
8864094 |
T |
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| Q |
205 |
atgatgatgt |
214 |
Q |
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|||||||||| |
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| T |
8864095 |
atgatgatgt |
8864104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 11146313 - 11146104
Alignment:
| Q |
6 |
atggacatcatcaccactcttgaaagtttgtatctcgaacatcttccaaaactagagtttgcactatgtgaaggagttttcttacctcccaaattacaaa |
105 |
Q |
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||||||| | |||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11146313 |
atggacaccctcacaactcttgaaagtttgagtctccgccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaa |
11146214 |
T |
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| Q |
106 |
gaatttctattacatctgtgagaataacaaagatgccgccattaattgaat---ggggtttccaaagccttacttctcttacaaatttgtatattgaaga |
202 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
11146213 |
caatttctattgcatctgtgagaataacaaagatgccgccattaattgaatgggggggtttccaaagccttacttctcttacaaatttgaaaattgaaga |
11146114 |
T |
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| Q |
203 |
taatgatgat |
212 |
Q |
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|||||||||| |
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| T |
11146113 |
taatgatgat |
11146104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 10891915 - 10892122
Alignment:
| Q |
5 |
gatggacatcatcaccactcttgaaagtttgtatctcgaacatcttccaaaactagagtttgcactatgtgaaggagttttcttacctcccaaattacaa |
104 |
Q |
| |
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|||||||| | ||||| |||||||| ||||| |||| | || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
10891915 |
gatggacaccctcacctctcttgaatgtttgagtctccatcagcttccaaaactagagtttgcaccatgcgaaggagttttcttacctcccaaattacaa |
10892014 |
T |
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| Q |
105 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctcttacaaatttgtatattgaagata |
204 |
Q |
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| T |
10892015 |
accatttctattaaatctgtgagaataacaaaaatgccgccattaattgaatggggtttccaaagccttacttatctttcaaaattgtatattaaagata |
10892114 |
T |
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| Q |
205 |
atgatgat |
212 |
Q |
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|||||||| |
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| T |
10892115 |
atgatgat |
10892122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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