View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6446_high_4 (Length: 414)
Name: NF6446_high_4
Description: NF6446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6446_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 25 - 371
Target Start/End: Original strand, 43532634 - 43532980
Alignment:
| Q |
25 |
ccgtcggcatctcaaatacaaataccaataccaaccttgttacgagaattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgtt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532634 |
ccgtcggcatctcaaatacaaataccaataccaaccttgttacgagaattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgtt |
43532733 |
T |
|
| Q |
125 |
gccatcgaatcatgttcatgttacttggccctgtaacatatttggtgctcgtgtaccactaccagtagatcttcttaattcctagaccagtttctagtct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532734 |
gccatcgaatcatgttcatgttacttggccctgtaacatatttggtgctcgtgtaccactaccagtagatcttcttaattcctagaccagtttctagtct |
43532833 |
T |
|
| Q |
225 |
tctagcaaatgcacagcttgttcaaagacttatgatgtcgtttttgtcacttgttgccacagtatcaagttacaacgcttccaactaatattttacaaat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532834 |
tctagcaaatgcacagcttgttcaaagacttatgatgtcatttttgtcacttgttgccacagtatcaagttacaacgcttccaactaatattttacaaat |
43532933 |
T |
|
| Q |
325 |
ttgtgtaacatacaattgnnnnnnngtaggaaaaagaagctgatgat |
371 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43532934 |
ttgtgtaacatacaattgtttttttgtaggaaaaagaagctgatgat |
43532980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University