View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6446_high_5 (Length: 384)
Name: NF6446_high_5
Description: NF6446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6446_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 13655640 - 13655999
Alignment:
| Q |
11 |
catcatcattacttccaagatcctcttctgcatctgaatgagcttctacttcatcatgttcttttctgtttgcttcaatttcaaaccctagacatttgaa |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13655640 |
catcatcattactttcaagatcctcttctgcatctgaatgagcttctacttcatcatgttcttttttgtttgcttcaatttcaaaccctagacatttgaa |
13655739 |
T |
|
| Q |
111 |
gaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgatttgatgatatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13655740 |
gaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgatttggtgatatt |
13655839 |
T |
|
| Q |
211 |
tcttccattgttcttcttgactcttctttgtgtcccattcttgtgctttaattgctattcaatgtgtgtttcaggtaggttggcagacttattaataagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13655840 |
tcttccattgttcttcttgactcttctttgtgtcccattcttgtgctttaattgctattcaatgtgtgtttcaggtaggttggcagacttattaataagt |
13655939 |
T |
|
| Q |
311 |
accttaccaatctttcatcaatagtgctttttgtctattgtattataaaaaatatttttg |
370 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13655940 |
accttaccaatctttcatcaatagtgcattttgtctattgtattataaaaaatatttttg |
13655999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 102 - 364
Target Start/End: Original strand, 13661132 - 13661389
Alignment:
| Q |
102 |
acatttgaagaaagttccaaggaatttttggagtaatgaacatggatggtaaagataaaaagtggcactcctctcatttgtaacctcttcttcttgattt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13661132 |
acatttgaagaaagttccaaggaatttttggagtaaagaacatggatggtgaagataaaaagtggcactcctctcatttgaaacctctgcttcttgattt |
13661231 |
T |
|
| Q |
202 |
gatgatatttcttccattgttcttcttgactcttctttgtgtcccattcttgtgctttaattgctattcaatgtgtgtttcaggtaggttggcagactta |
301 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||| |
|
|
| T |
13661232 |
ggtgatgtttcttccattgttcttcttgactcttat-----tcccattcttgtgctttaattgctattcgatgtgtgtttcaggtgagttggtaggctta |
13661326 |
T |
|
| Q |
302 |
ttaataagtaccttaccaatctttcatcaatagtgctttttgtctattgtattataaaaaata |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||| |
|
|
| T |
13661327 |
ttaataagtaccttaccaatctttcatcaatggtgcattttatctattgtactataaaaaata |
13661389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University