View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6446_low_3 (Length: 479)
Name: NF6446_low_3
Description: NF6446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6446_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 17246741 - 17247007
Alignment:
| Q |
12 |
acagagaaagtcagaagggaatgacataatgtgggagaaagttgatgaaagtatcaagtttaaaatttgaatgtgatgcaatatatataccatgaaatta |
111 |
Q |
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| T |
17246741 |
acagagaaagtcagaagggaatgacataatgtgggagaaagttgatgaaagtatcaagtttaaaatttgaatgtgatgcgatatatacaccatgaaatta |
17246840 |
T |
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| Q |
112 |
ccaagtttttgaaaatttaaagaatgatgtataatttttaaagaatgatatgtagttttaagtatatcaaagacgataaatagacatctatatt-tgtcn |
210 |
Q |
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| T |
17246841 |
ccaagtttttgaaaatttaaagaatgatgtataatttttaaagaatgatatgtagttttaagtatatcaaagacgataaatagacatctatattctgtc- |
17246939 |
T |
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| Q |
211 |
nnnnnnntaaatattaaatatccatatcgnnnnnnnnnnnnggggatgggtaactcacttacatcttc |
278 |
Q |
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| T |
17246940 |
aaaaaaataaatattaaatatccatatcgtttttattttttggggatgggtaactcacttacatcttc |
17247007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 328 - 458
Target Start/End: Original strand, 17247057 - 17247185
Alignment:
| Q |
328 |
ttggaggtgtcaaagtgaagataaaaaattgacaatatatataaatcaaaaagcataatcatgaatgtataatagcactagtagtgccccggaggaggca |
427 |
Q |
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| T |
17247057 |
ttggaggtgtcaaagtgaagataaaaaattgacaacatata--aatcacaaagcataatcattaatgtataatagcactagtagtgccccaaaggaggca |
17247154 |
T |
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| Q |
428 |
ttctctggggcgctgttgttaggcttctcga |
458 |
Q |
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| T |
17247155 |
ttctctagggcactgttgttaggcttctcga |
17247185 |
T |
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