View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6446_low_6 (Length: 384)

Name: NF6446_low_6
Description: NF6446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6446_low_6
NF6446_low_6
[»] chr3 (11 HSPs)
chr3 (145-384)||(43532910-43533149)
chr3 (6-145)||(43533211-43533351)
chr3 (149-271)||(43528739-43528863)
chr3 (270-377)||(43528599-43528705)
chr3 (6-145)||(43528929-43529066)
chr3 (6-97)||(43537658-43537751)
chr3 (6-92)||(43523220-43523308)
chr3 (270-341)||(43537320-43537391)
chr3 (149-218)||(43537478-43537549)
chr3 (273-307)||(43522905-43522939)
chr3 (149-208)||(43523046-43523107)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 145 - 384
Target Start/End: Complemental strand, 43533149 - 43532910
Alignment:
Q  145 gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa 244  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533149 gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa 43533050  T
Q  245 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaaaca 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43533049 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacaaaaaaaca 43532950  T
Q  345 attgtatgttacacaactttgtaaaatattagttggaagc 384  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43532949 attgtatgttacacaaatttgtaaaatattagttggaagc 43532910  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 43533351 - 43533211
Alignment:
Q  6 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnn 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||         
T  43533351 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaa 43533252  T
Q  106 nnncaatcacactcatgcatatacataaatt-atttgacag 145  Q
       |||||||||||||||||||||||||||| |||||||||    
T  43533251 aaacaatcacactcatgcatatacataaattaatttgacag 43533211  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
Q  149 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat 246  Q
    |||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  43528863 gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat 43528764  T
Q  247 gctaaccaattttctgcatagagat 271  Q
    || ||||||||||||||||||||||    
T  43528763 gccaaccaattttctgcatagagat 43528739  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 270 - 377
Target Start/End: Complemental strand, 43528705 - 43528599
Alignment:
Q  270 attacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaaacaattgtatgttacacaactttgtaaa 369  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| |||||||||  |||||||    
T  43528705 attacagtcttatttattgcacgtcccattgctttgagaacaatatcatcagctcctttttcctaca-aaaaacaaatgtaagttacacaaaattgtaaa 43528607  T
Q  370 atattagt 377  Q
    ||||||||    
T  43528606 atattagt 43528599  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 43529066 - 43528929
Alignment:
Q  6 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgag--caagtaaaacacaacggn 101  Q
    |||||||| ||||||||||||||||||| | | ||||||||||| ||||||| |||||||||||||  ||||||||||||  ||||||||||||||||      
T  43529066 cctgtggacgatgtatccagctctttctttgacaaagtaattgtaatcatcgaaacatgacgagtagtctccaaactgagcacaagtaaaacacaacg-- 43528969  T
Q  102 nnnnnnncaatcacactcatgcatatacataaattatttgacag 145  Q
            ||||| ||||||||||||||||||||||||||||||    
T  43528968 ----aaaaaatcatactcatgcatatacataaattatttgacag 43528929  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 43537751 - 43537658
Alignment:
Q  6 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaacacaa 97  Q
    |||||||||||||||||||||||||||| | | |  |||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||    
T  43537751 cctgtggaggatgtatccagctctttctttgacagcgtaattgtgatcattgaaacatgacgagtagtctccaaactgagcaagtaaaacacaa 43537658  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 43523308 - 43523220
Alignment:
Q  6 cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaa 92  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||| | |||||||||||||   ||||||||| ||||||||||    
T  43523308 cctgtggaggatgtatccagctctttctttgacaaagtaattgtgatcattgaaacatgacgagtagtttccaaactgcgcaagtaaaa 43523220  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 43537391 - 43537320
Alignment:
Q  270 attacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||| | |||||||||||| ||||    
T  43537391 attacagtcttatttattgcacgtcccattgctttgacaacaatttcatcagatcctttttcctacagaaaa 43537320  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
Q  149 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag 218  Q
    |||||||||||||||||||  |||||||||||||| | |  |||||||||||||||||||||||||| ||||    
T  43537549 gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag 43537478  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
Q  273 acagtcttatttattgcacgtcccattgctttgag 307  Q
    |||||||||||||| ||||||||||||||||||||    
T  43522939 acagtcttatttatcgcacgtcccattgctttgag 43522905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
Q  149 gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa 208  Q
    ||||||||||||||||||| |  ||||||||||||   || |||||||||||||||||||||    
T  43523107 gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa 43523046  T

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