View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6446_low_7 (Length: 325)

Name: NF6446_low_7

Description: NF6446

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6446_low_7

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 174; E-Value: 1e-93

Query Start/End: Original strand, 135 - 312

Target Start/End: Original strand, 23174873 - 23175050

Alignment:

Q	135	attttaattgggtaatccagttactgattttttctttctacaatgtgataaacagttaaacacacccgttcttgttatggatttggaccctcgagtcttt	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23174873	attttaattgggtaatccagttactgattttttctttctacaatgtgataaacagttaaacacacccgttcttgttatggatttggaccctcgagtcttt	23174972	T

Q	235	gcctctctgtgtactgcttagttcacttcctatcggtatttgatttaccagtaagatcaaatatcaaaacatttccct	312	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23174973	gcctctctgtgtactgcttagttcacttcctatcggtatttgatttactagtaagatcaaatatcaaaacatttccct	23175050	T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 209 - 302

Target Start/End: Original strand, 13983642 - 13983735

Alignment:

Q	209	ttatggatttggaccctcgagtctttgcctctctgtgtactgcttagttcacttcctatcggtatttgatttaccagtaagatcaaatatcaaa	302	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	13983642	ttatggatttggacccttaagtctttgcctatctgtcaactacttggatcgattcctatcggtttttcaatttccggtaagaacaaatatcaaa	13983735	T

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