View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_12 (Length: 359)
Name: NF6447_high_12
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 112 - 353
Target Start/End: Complemental strand, 966268 - 966024
Alignment:
| Q |
112 |
aggtatagttggtcttttcattgaagtcaagtcaacttccatgttgccaatgccatcccatatgc---catcacatgccaacgccatccttattgtcaag |
208 |
Q |
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| T |
966268 |
aggtatagttggtcttgtcattgaagtcaagtcaacttccatgttgccaatgatgtccacaatgctcccatcacatgccaatgccatccttattgtcaag |
966169 |
T |
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| Q |
209 |
catctttccttttaaagaagtcctttgacagttgacttatattctctctcaaaatagcccaattccaaacgacccactttctgttaaaggaatatctaga |
308 |
Q |
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| T |
966168 |
catctttccttttaaagaagtcctttgacagttgacttatattctctctcaaaatagccctattccaaacgacccactttctgttaaaggaatatctaaa |
966069 |
T |
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| Q |
309 |
aaatatataaactctaaaacaaggaccacccttactatttctgtg |
353 |
Q |
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| T |
966068 |
aaatatataaactctaaaacaaggaccacccttactatttctgtg |
966024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 966375 - 966311
Alignment:
| Q |
6 |
aaatatttaatcgttaataagatttaacgatgaccatttctgtaagcatagtgcaaacacaatgc |
70 |
Q |
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| T |
966375 |
aaatatttaatcgttaataagatttaacgatgaccgtttctgtaagtatagtgcaaagacaatgc |
966311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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