View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_13 (Length: 351)
Name: NF6447_high_13
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 31265038 - 31265350
Alignment:
| Q |
13 |
aaaattaaccagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcct |
112 |
Q |
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| T |
31265038 |
aaaattaactagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcct |
31265137 |
T |
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| Q |
113 |
actgtatcttcaataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtcttatatggcatggg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
31265138 |
actgtatcttcaataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtattatat------gg |
31265231 |
T |
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| Q |
213 |
catgttgacagtgtgcaaacacnnnnnnnnnnnnnnnnnnnatgcaaatagaaagtttatatcctaacattgaaggtatcattaactgcatccatcttac |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
31265232 |
catgttgacagtgtgcaaacac---ttttttttttttttttatgcaaatagaaagtttatatcctatcattggaggtatcattaactgcatccatcttac |
31265328 |
T |
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| Q |
313 |
cacacttatttcctacatgttt |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
31265329 |
cacacttatttcctacatgttt |
31265350 |
T |
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