View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_18 (Length: 288)
Name: NF6447_high_18
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 1216121 - 1216388
Alignment:
| Q |
7 |
tcgaagaaaattggaaatggttcgattcagttcagttttaacgcattcagttttggttataaaccaaactttgaggagggagggagggttcaacaagaaa |
106 |
Q |
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| T |
1216121 |
tcgaacaaaattggaaatggttcggttcagttcagttttaacgcattcagttttggttataaaccaaactttgaggagggagggagggttcaacaagaaa |
1216220 |
T |
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| Q |
107 |
acctaatgttttgttttgtcgcttcagatatggaagtagatccaaaagatttaaaacgcaaagtacaatttgaggagggagtgttcaacaagaaacctcg |
206 |
Q |
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| T |
1216221 |
acctaatgttttgttttgtcgcttcagatatggaagtagatccaaaagatttaaaacgcagagtacaatttgaggagggagtgttcaacaagaaacctcg |
1216320 |
T |
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| Q |
207 |
ccttctaatatttcatttaaggtagtacaaaaatactaatatgttatgcgttcttaaagaagcatatg |
274 |
Q |
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| T |
1216321 |
ccttctaacatttcgtttaaggtagtacaaaaatactaatatgttatgcgttcttaaagaagcatatg |
1216388 |
T |
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