View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_23 (Length: 252)
Name: NF6447_high_23
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 602040 - 602281
Alignment:
| Q |
1 |
ttgtagttatgtcgttaagttattagctaggaggggccacttaatcaatacggacaaatatttaaaaattgtttaaaattctggcaacaatcgatgattt |
100 |
Q |
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| T |
602040 |
ttgtagttatgtcgttaagtttttag----gagggaccacttagtcaatacggacaaatatttaaaaattgtttaaaattctgacaacaatcgatgatgt |
602135 |
T |
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| Q |
101 |
gttttgacaatagaaattcatatcgtctttatgattagttgatgacctattnnnnnnnnnntacaaggagaagcaaataagagtactacataccaatcat |
200 |
Q |
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| T |
602136 |
gttttgaaaatagaagttcatatcgtctttatggttaggtgataacctatt-aaaaaaaaatacaaggagaagcaaataagagtactacataccaatcat |
602234 |
T |
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| Q |
201 |
atcataacca------taaccataaatttgatgttttgcatagtatt |
241 |
Q |
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| T |
602235 |
atcataaccataaccttaaccataaatttgatgttttgcatagtatt |
602281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 805016 - 805090
Alignment:
| Q |
162 |
tacaaggagaagcaaataagagtactacataccaatcatatcataaccataaccataaatttgatgttttgcata |
236 |
Q |
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|||||||| || ||||| ||||||||||||| | || ||||||||||||||||| ||| ||||||||||||||| |
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| T |
805016 |
tacaaggaaaaacaaatgagagtactacatatctttcctatcataaccataaccaaaaagttgatgttttgcata |
805090 |
T |
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