View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_3 (Length: 611)
Name: NF6447_high_3
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 45729723 - 45729121
Alignment:
| Q |
1 |
cgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagctccaaccgtaagcaaa |
100 |
Q |
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| T |
45729723 |
cgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagctccaaccgtaagcaaa |
45729624 |
T |
|
| Q |
101 |
acaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaaaccaagctgagatgctattattaaggcagaag |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45729623 |
acaacggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaacgcagtgaaaccaagctgagatgctattattaaggcagaag |
45729524 |
T |
|
| Q |
201 |
tggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggtttcat |
300 |
Q |
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| T |
45729523 |
tggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggtttcat |
45729424 |
T |
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| Q |
301 |
ggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagggga |
400 |
Q |
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| T |
45729423 |
ggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagattgcgagggga |
45729324 |
T |
|
| Q |
401 |
atgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcactgc |
500 |
Q |
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| T |
45729323 |
atgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcactgc |
45729224 |
T |
|
| Q |
501 |
aggtacctagggataatatgagacaatttactacgagaaggaatctcttcannnnnnnctctgcaacttgttttttaccatcttccatgtgtgtgttcat |
600 |
Q |
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| T |
45729223 |
aggtacctagggataatatgagacaatttactacgagaaggaatctcttcatttttttctctgcaacttgttttttaccatcttccatgtgtgtgttctt |
45729124 |
T |
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| Q |
601 |
ctc |
603 |
Q |
| |
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||| |
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| T |
45729123 |
ctc |
45729121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 45725534 - 45724991
Alignment:
| Q |
1 |
cgtggttgaaaaactaatccaatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagctccaaccgtaagcaaa |
100 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
45725534 |
cgtggttgaaaaaccaatcgcatattgttttgcagaaacaccagcaggacgatcactactcgtatgcatagccaaaacaccagcaccaacagtaagcaaa |
45725435 |
T |
|
| Q |
101 |
acaatggcgtttacagtaaaagctgtaaatttctctttcacaataagaaaagcgaaaaatgcagtgaaaccaagctgagatgctattattaaggcagaag |
200 |
Q |
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| T |
45725434 |
aaaacggcgtttacggtaaatgctgtaaatttctgtttcacaagaagaaaagcgaaaaacgcggtgaaaccaagctgagatgctataattaaggaagaag |
45725335 |
T |
|
| Q |
201 |
tggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggtttcat |
300 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||| |
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| T |
45725334 |
tggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccggtgaggattccgacaaaggcggctgcaaagaaaataggtggtttcat |
45725235 |
T |
|
| Q |
301 |
ggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagggga |
400 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| | |||||| ||| | | || || ||||| |||| |||||||||||||| ||||||| |
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| T |
45725234 |
ggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattgtgagggga |
45725135 |
T |
|
| Q |
401 |
atgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcactgc |
500 |
Q |
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||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |
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| T |
45725134 |
atgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattaggggaccaccgg |
45725035 |
T |
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| Q |
501 |
aggtacctagggataatatgagacaatttactacgagaaggaat |
544 |
Q |
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|| ||||||||| |||||| ||||||||||||| ||||||||| |
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| T |
45725034 |
agttacctagggctaatatcagacaatttactatcagaaggaat |
45724991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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