View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6447_high_32 (Length: 240)

Name: NF6447_high_32
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6447_high_32
NF6447_high_32
[»] chr4 (3 HSPs)
chr4 (136-220)||(55743359-55743441)
chr4 (14-70)||(51574031-51574088)
chr4 (14-69)||(34293119-34293175)
[»] scaffold0096 (1 HSPs)
scaffold0096 (14-69)||(40719-40775)
[»] chr7 (4 HSPs)
chr7 (15-67)||(9158851-9158903)
chr7 (1-65)||(7579432-7579498)
chr7 (14-69)||(23657862-23657918)
chr7 (14-69)||(38796722-38796778)
[»] chr1 (4 HSPs)
chr1 (14-71)||(32151777-32151835)
chr1 (15-52)||(508775-508812)
chr1 (39-68)||(27787750-27787779)
chr1 (15-67)||(52853897-52853950)
[»] chr3 (5 HSPs)
chr3 (14-66)||(42371078-42371130)
chr3 (21-69)||(6746467-6746516)
chr3 (21-68)||(14986056-14986104)
chr3 (14-69)||(33580757-33580813)
chr3 (14-69)||(45713701-45713757)
[»] chr8 (7 HSPs)
chr8 (14-68)||(9478952-9479007)
chr8 (14-64)||(25106946-25106997)
chr8 (21-69)||(1566094-1566143)
chr8 (21-68)||(4203400-4203448)
chr8 (14-69)||(8624843-8624899)
chr8 (21-68)||(13474631-13474679)
chr8 (14-69)||(40304615-40304671)
[»] chr2 (2 HSPs)
chr2 (14-70)||(29404151-29404207)
chr2 (14-69)||(6831630-6831686)
[»] scaffold1532 (1 HSPs)
scaffold1532 (21-68)||(1619-1667)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 55743359 - 55743441
Alignment:
Q  136 taacttaattgttttccaaaaataaaactttacattgagaatcaaactccacaaatctcaggataatatattattggggagagac 220  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| | |||||||||| ||||||||||||||    
T  55743359 taacttaattgttttccaaaa-taaaactttacattgagaatcagactcaacaaatccccggataatata-tattggggagagac 55743441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 51574031 - 51574088
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggtgg-tgtaaattagcagcccca 70  Q
    |||||| ||||||||||| || ||| ||||||||||||| ||||| ||||||||||||    
T  51574031 gtgtagtttgctaacttgcaccttaatgtttttaggtggttgtaagttagcagcccca 51574088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 34293175 - 34293119
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  34293175 gtgtagcttgctaacttgcaccttaatgtttttaggtgggtgtaagttagcagcccc 34293119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 40775 - 40719
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  40775 gtgtagcttgctaacttgtaccttagtgtttttaggtaggtgtaagttagcagcccc 40719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9158851 - 9158903
Alignment:
Q  15 tgtagattgctaacttgtactttagtgtttttaggtggtgtaaattagcagcc 67  Q
    ||||||||||||||||   | ||||||||||||||||||||||||||||||||    
T  9158851 tgtagattgctaacttaccccttagtgtttttaggtggtgtaaattagcagcc 9158903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7579498 - 7579432
Alignment:
Q  1 taaaatactagt-agtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcag 65  Q
    |||||||| ||| ||||||| ||||||||||| || |||||||||| |||| |||||||||||||||    
T  7579498 taaaatacaagtgagtgtagcttgctaacttgcaccttagtgttttaaggtgggtgtaaattagcag 7579432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 23657862 - 23657918
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || ||||||||||||||| ||||||| |||||| ||||    
T  23657862 gtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcaacccc 23657918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 38796722 - 38796778
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  38796722 gtgtagtttgctaacttgcaccttaatgtttttaggtgggtgtaagttagcagcccc 38796778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 32151777 - 32151835
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagccccaa 71  Q
    |||||| ||||||||||| || ||||||||||||||| ||||||| |||||||||||||    
T  32151777 gtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagccccaa 32151835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 508775 - 508812
Alignment:
Q  15 tgtagattgctaacttgtactttagtgtttttaggtgg 52  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  508775 tgtagtttgctaacttgtactttagtgtttttaggtgg 508812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 27787750 - 27787779
Alignment:
Q  39 gtgtttttaggtggtgtaaattagcagccc 68  Q
    ||||||||||||||||||||||||||||||    
T  27787750 gtgtttttaggtggtgtaaattagcagccc 27787779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 52853897 - 52853950
Alignment:
Q  15 tgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcc 67  Q
    ||||| ||||||||||| || ||||||||||||||| ||||||| |||||||||    
T  52853897 tgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcc 52853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 42371078 - 42371130
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggtggtgtaaattagcagc 66  Q
    |||||| ||||||||||| || ||||| |||||||||||||||| ||||||||    
T  42371078 gtgtagcttgctaacttgcaccttagtatttttaggtggtgtaagttagcagc 42371130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 6746516 - 6746467
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    ||||||||||| || ||||||||||||||| ||||||| |||||||||||    
T  6746516 ttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccc 6746467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 14986056 - 14986104
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagccc 68  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  14986056 ttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagccc 14986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 33580757 - 33580813
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| |||||||||||||| ||| || |||||||| ||||||| |||||||||||    
T  33580757 gtgtagcttgctaacttgtaccttaatgattttaggtaggtgtaagttagcagcccc 33580813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 45713757 - 45713701
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || ||||||||||||||| ||||||| | |||||||||    
T  45713757 gtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagtcagcagcccc 45713701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 9479007 - 9478952
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagccc 68  Q
    |||||| ||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  9479007 gtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagccc 9478952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 25106997 - 25106946
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggtgg-tgtaaattagca 64  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  25106997 gtgtagcttgctaacttgtaccttagtgtttttaggtggatgtaagttagca 25106946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1566094 - 1566143
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    ||||||||||| || ||||||||||||||| ||||||| |||||||||||    
T  1566094 ttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccc 1566143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 4203400 - 4203448
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggtg-gtgtaaattagcagccc 68  Q
    ||||||||||| || |||||||||||||||| |||||| ||||||||||    
T  4203400 ttgctaacttgcaccttagtgtttttaggtgagtgtaagttagcagccc 4203448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8624899 - 8624843
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggtg-gtgtaaattagcagcccc 69  Q
    |||||| || |||||||| || |||||||||||||||| |||||| |||||||||||    
T  8624899 gtgtagtttactaacttgcaccttagtgtttttaggtgagtgtaagttagcagcccc 8624843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 13474679 - 13474631
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggtgg-tgtaaattagcagccc 68  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||||||||    
T  13474679 ttgctaacttgcaccttagtgtttttaggtggatgtaagttagcagccc 13474631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 40304615 - 40304671
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || ||||||||||||||| |||| || |||||||||||    
T  40304615 gtgtagcttgctaacttgcaccttagtgtttttaggtgggtgcaagttagcagcccc 40304671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 29404207 - 29404151
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccca 70  Q
    |||||| ||||||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  29404207 gtgtagcttgctaacttgcactt-agtgtttttaggtgggtgtaagttagcagcccca 29404151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 6831630 - 6831686
Alignment:
Q  14 gtgtagattgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagcccc 69  Q
    |||||| ||||||||||| || || |||||||||||| ||||||| |||||||||||    
T  6831630 gtgtagcttgctaacttgcaccttggtgtttttaggtgggtgtaagttagcagcccc 6831686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 1619 - 1667
Alignment:
Q  21 ttgctaacttgtactttagtgtttttaggt-ggtgtaaattagcagccc 68  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||||||    
T  1619 ttgctaacttgcaccttagtgtttttaggtaggtgtaagttagcagccc 1667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University