View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6447_high_43 (Length: 217)
Name: NF6447_high_43
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 5811606 - 5811426
Alignment:
| Q |
21 |
gaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811606 |
gaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacg |
5811507 |
T |
|
| Q |
121 |
acgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttctctg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
5811506 |
acgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatgggtccttgctacttctctg |
5811426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 27736929 - 27736748
Alignment:
| Q |
17 |
atcagaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttc |
116 |
Q |
| |
|
||||||||||||||| | ||| ||||| ||||||| || | | ||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
27736929 |
atcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttc |
27736830 |
T |
|
| Q |
117 |
aacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttct |
198 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
27736829 |
aacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatggaaactaaaataggcccgtgctacttct |
27736748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 32627958 - 32627783
Alignment:
| Q |
24 |
attatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacg |
123 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| | |
|
|
| T |
32627958 |
attatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacacca |
32627859 |
T |
|
| Q |
124 |
tatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttctc |
199 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| | ||||||||| |||||||| || || |||| |||||| |
|
|
| T |
32627858 |
tatttacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctc |
32627783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 32704184 - 32704008
Alignment:
| Q |
26 |
tatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccga----atataaagtctttttgaacgatctaccgggaaatgatttcaacga |
121 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||| || || || |||||| | |
|
|
| T |
32704184 |
tatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaa |
32704085 |
T |
|
| Q |
122 |
cgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttct |
198 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| |||| |||||||||||| ||||| | || |||||||||| |
|
|
| T |
32704084 |
tgtatttaggtccctcgacacgttcaaagaaaatctacaggctgaaatggaaaccgaaatggtaccttgctacttct |
32704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 32709903 - 32709822
Alignment:
| Q |
17 |
atcagaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgat |
98 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||| | |||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
32709903 |
atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacgat |
32709822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 21943806 - 21943661
Alignment:
| Q |
24 |
attatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacg |
123 |
Q |
| |
|
||||| || ||||| ||||||||||||| ||| | |||||| |||||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
21943806 |
attataaatgttgtggaaaagctttgtcaagagttgaatcatgaatctcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacg |
21943707 |
T |
|
| Q |
124 |
tatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaat |
169 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21943706 |
tatttaggtcccttgagaccttcaaagaaaaactttgtaatgaaat |
21943661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 20115847 - 20116030
Alignment:
| Q |
18 |
tcagaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttca |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| | |||||| ||||||| |||||| | |||| ||||||||||||| | ||||| || |||| |
|
|
| T |
20115847 |
tcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatctcctgaatatgatgtctctttgaacgatctatccggaaacgacttca |
20115946 |
T |
|
| Q |
118 |
acgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactgaaatcggcccgtgctacttctctg |
201 |
Q |
| |
|
||| | |||||| |||||||||||||||||||||||| || ||||||| |||||| | |||| || || ||||||||||||| |
|
|
| T |
20115947 |
acggcatatttaagtcccttgacaccttcaaagaaaagctttctaatgaattggaaaataaaatgggtccttgctacttctctg |
20116030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University