View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_high_5 (Length: 546)
Name: NF6447_high_5
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 5 - 525
Target Start/End: Complemental strand, 7830787 - 7830267
Alignment:
| Q |
5 |
taattgtaaagtttgttaaatttggtaatgagcttgtcgccgatgttatgaaataacaacattgacatatatagtaaccaaagatatatacatataatga |
104 |
Q |
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| T |
7830787 |
taattgtaaagtttgttaaatttggaaatgagtttgtcgccgatgttatgaaataacaacattga--tatatagtaactaaagatatatacatataatga |
7830690 |
T |
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| Q |
105 |
tgagatatgataggatattatggtaaatctattttgtgttgatattgcataagaattgaagtatattaatatatgtttacaaaattctttnnnnnnnnta |
204 |
Q |
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| T |
7830689 |
tgagatatgataggatattatggtaaatctattttgttttgatattgcataagaattgaagtatattaatatatgtttacaaaattctttcaaaaaaaaa |
7830590 |
T |
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| Q |
205 |
ta--tgtttaccaaataaaactagtatccaatcctcatgggtttgcttcgtggtttaggttgggatctttgatggtcaaaattttaagattagagtaatg |
302 |
Q |
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| T |
7830589 |
aaaatgtttaccaaataaaactagtatccaatcctcatgggtttgcttcgtggtttaggttgggatctttgatggtcaaaattttaagattagagtaatg |
7830490 |
T |
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| Q |
303 |
cctccaaagtgtttaagatgatcttgttcttatttgcaagttaatttgtctaccctagattcgtccctgcactgcaacccctcttagctcggtatctaga |
402 |
Q |
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| T |
7830489 |
cctccaaagtgtttaagatgatcttgctcttatttgcaagttaatttgtctcccctagattcgtccctgcactgcaacccctcttagctcggtatctaga |
7830390 |
T |
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| Q |
403 |
tccactactgaatttgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggactaaatttttaagattaatcagtattt |
502 |
Q |
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| T |
7830389 |
tccactactgaatctgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggcctaaatttttaagattaatcagtattt |
7830290 |
T |
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| Q |
503 |
tgaagtgtttaagacggacctac |
525 |
Q |
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| T |
7830289 |
tgaagtgtttaagacggacctac |
7830267 |
T |
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