View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_10 (Length: 394)
Name: NF6447_low_10
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 28753294 - 28753059
Alignment:
| Q |
16 |
atggtggtggaaatggcaggggtgcaaaaggagaaggtgaacgcaatggaagtgtaaaagacaacggaggtcgaacggataacaaaagaagtggtcgcat |
115 |
Q |
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| T |
28753294 |
atggtggtggaaatggcaggggtgcaaaaggagaaggtgaacgcaatggaagtgtaaaagacaacggaggtcgaacggataacaaaagaagtggtcgcat |
28753195 |
T |
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| Q |
116 |
tggtgaaggttggcatttaagaggtccaatagattcaggaggtggctttaacagtaaaaataaaaatggagggcgtacccgtagaggacgacttccatga |
215 |
Q |
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| T |
28753194 |
tggtgaaggttggcatttaagaggtccaatagattcaggaggtggctttaacagtaaaaataaaaatggagggcgtacccgtagaggacgacttccatga |
28753095 |
T |
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| Q |
216 |
aaatcagacatatgcatgtttgtttggtattctata |
251 |
Q |
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| T |
28753094 |
aaatcagacatatgcatgtttgtttggtatcctata |
28753059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 381
Target Start/End: Complemental strand, 28753032 - 28752896
Alignment:
| Q |
246 |
tctatacctatagtctgtaataggatgagcatat----tttcctaaattaatatacatttcacccataaaaaagtatcatggttacatgttatattattt |
341 |
Q |
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| T |
28753032 |
tctatacctatagtctgtaataggatgagcatatatattttcctaaattaatatgtatttcacccataaaaaagtatcatggttacatgttatattattt |
28752933 |
T |
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| Q |
342 |
tgtatttcttacatattatcacggttaagtggatgaaaat |
381 |
Q |
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| T |
28752932 |
tgta---cttacatattattacagttaagtggataaaaat |
28752896 |
T |
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