View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_12 (Length: 359)
Name: NF6447_low_12
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 45611717 - 45611967
Alignment:
| Q |
5 |
gagaatcaaaggctcttttgtccgtctcaagaaagttgtaacacgatctgctaggaaactcaggaggtcgaaaatttccgtgtttagaatcaaatgtggc |
104 |
Q |
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| T |
45611717 |
gagaatcaaaggctcttttgtccgtctcaggaaagttgtaatacgatctgctaggaaattcaggaggttggaattttcaatgtttaaaatcaaatgtggc |
45611816 |
T |
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| Q |
105 |
ttccattaccgaagatatcacaacaagtttcgcaaaagccaatttttctcatgtttat----gttagtgtctgcatatg--nnnnnnnccaaagacattg |
198 |
Q |
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| T |
45611817 |
ttctattaccgaagatatcacaacaagtttcagaaaagtcaattttcctcatgtttatgttagttagtgtctacatatgaaaaaaaaaccaaagacattg |
45611916 |
T |
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| Q |
199 |
tggtcttgacacctcaatagatcactaataatttgatgaaatataagggat |
249 |
Q |
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| T |
45611917 |
tggtcttgacacctcaatagatcactaataatttgaggaaatataagggat |
45611967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 45609386 - 45609553
Alignment:
| Q |
5 |
gagaatcaaaggctcttttgtccgtctcaagaaagttgtaacacgatctgctaggaaactcaggaggtcgaaaatttccgtgtttagaatcaaatgtggc |
104 |
Q |
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| T |
45609386 |
gagaatcaaaggctcttttgtccgtctcagaaaagttgtaatacgatctgctaggaaactcaggaggttggaattttctgtgtttaaaatcaaatgtggc |
45609485 |
T |
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| Q |
105 |
ttccattaccgaagatatcacaacaagtttcgcaaaagccaatttttctcatgtttatgttagtgtct |
172 |
Q |
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| T |
45609486 |
ttctattaccgaagatatcacaataagtttcggaaaagccaattttcctcgtgtttatattagtgtct |
45609553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 36895369 - 36895409
Alignment:
| Q |
224 |
taataatttgatgaaatataagggattgaatgtaattacat |
264 |
Q |
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| T |
36895369 |
taataatttgataaaatataagtgattgaatgtaatcacat |
36895409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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