View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_15 (Length: 341)
Name: NF6447_low_15
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 112 - 326
Target Start/End: Complemental strand, 41620515 - 41620294
Alignment:
| Q |
112 |
tatctgttattattttcgctcttaattataaaaagaaaatattaaatatattttgtctttgtaaaaatatctcacttagcctttgatgatgatattattc |
211 |
Q |
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| T |
41620515 |
tatctgttattattttcgctcttaattataaaaagaaaatattaaatatattttgtctttgtaaaa-tatctcacttagcctttgatgatgatattattc |
41620417 |
T |
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| Q |
212 |
tatttgttgaagataatgttgagcaaatgcaagttatatcaagtattattgttaattaatttcttttgtagagctcatgggaagaaagt--------taa |
303 |
Q |
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| T |
41620416 |
tatttgttgaagataatgttgagcaaatgcaagttatatcaagtattattgtttattaatttcttttgtagagctcatgggaagaaagttaatcacttaa |
41620317 |
T |
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| Q |
304 |
tactaatatatctagagtatatt |
326 |
Q |
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| T |
41620316 |
tactaatatatctagagtatatt |
41620294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 41620905 - 41620803
Alignment:
| Q |
11 |
cataggaagccctacgatacaaatggaaataaaataaaagaagctccgccctaaattaagcactccactactaaaaattacgcatattaaatgttttgta |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41620905 |
cataggaagccctacgatacaaatggaaataaaagaaaagaagctccgtcctaaattaagcactccactactaaaaattacgcatattaaatgttttcta |
41620806 |
T |
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| Q |
111 |
cta |
113 |
Q |
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||| |
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| T |
41620805 |
cta |
41620803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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