View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_17 (Length: 305)
Name: NF6447_low_17
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 328113 - 328406
Alignment:
| Q |
18 |
atatcatattttgttttgaactggtatttaggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagccatcta |
117 |
Q |
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| T |
328113 |
atatcatattttgttttgaactggtatt-aggcaaactgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagccatcta |
328211 |
T |
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| Q |
118 |
tttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctacgagatgaaatattatctaccttctcaattattt------- |
210 |
Q |
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| T |
328212 |
tttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctaggagatgaaatattatctaccttctcaattattttcctttt |
328311 |
T |
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| Q |
211 |
-------tcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttggataaaataaatgatatatcttgaacctttg |
298 |
Q |
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| T |
328312 |
gcaagcatcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttggataaaataaatgatatatcttgaacctttg |
328406 |
T |
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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 27412630 - 27412548
Alignment:
| Q |
55 |
tgtcaaaagcagcagtactcaaggcaatctgtgcaagtttccaagagaccactgagccatctatttgtttaactccaggtctt |
137 |
Q |
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|||||| | |||| || ||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
27412630 |
tgtcaagaccagcggttctcaaggcaatgtgtgcaggtttccaagagaccactgaaccatcaatttgcttaactccaggtctt |
27412548 |
T |
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