View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_2 (Length: 616)
Name: NF6447_low_2
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 26380965 - 26380384
Alignment:
| Q |
19 |
ctagtaggataaagagattgaggaagctgttgaagtcccctattggaaggaaaataaagtggtgttgaaggaacattgtttacatttggagtagtagtgt |
118 |
Q |
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| T |
26380965 |
ctagtaggataaagagattgaggaagctgttgaagtcccctattagaaggaaaataaagtggtgttgaaggaacattgtttacatttggagtagtagtgt |
26380866 |
T |
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| Q |
119 |
acatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtgaaggatacacaacatgttgttcataagg |
218 |
Q |
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| T |
26380865 |
acatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtgaaggatacacaacatgttgttcataagg |
26380766 |
T |
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| Q |
219 |
gttataaggcgaagaaaaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataacaaactccatgaccataaggagcattgttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
26380765 |
gttataaggcgaagaaaaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataacaaactccattaccataaggaacattgttt |
26380666 |
T |
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| Q |
319 |
ccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttgcataccccacttgatattttcagaaactaaaccttgtggatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380665 |
ccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttgcataccccacttgatattttcagaaactaaaccttgtggatttt |
26380566 |
T |
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| Q |
419 |
gtgaaaccccaaaagttgaggcttttggactaccaccac---cacccatgttttggtaacgtgggtgtgttactgttactgtttcatcatcaacaacgtt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380565 |
gtgaaaccccaaaagttgaggcttttggactaccaccaccaccacccatgttttggtaacgtgggtgtgttactgttactgtttcatcatcaacaacgtt |
26380466 |
T |
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| Q |
516 |
gttattgttgttgttgtatgcatgagattcccaaaaacgaggcatgttagtgaatgattcaacaagattgttattactattattacct |
603 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26380465 |
gtta------ttgttgtatgcatgagattcccaaaaacaaggcatgttagtgaatggttcaacaagattgttattactattattacct |
26380384 |
T |
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