View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_27 (Length: 246)
Name: NF6447_low_27
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44001840 - 44001611
Alignment:
| Q |
1 |
ttctgggcccatccaaccattgatgttttgaatcattgggaattttaaagtaccaattttggaatcacaaacacccaactccattttggaacttgtcctc |
100 |
Q |
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| T |
44001840 |
ttctgggcccatccaaccattgatgttttgaatcatatggaattttaaagtaccaattttggaatcataaacacccaacttcattttggaacttgtcctc |
44001741 |
T |
|
| Q |
101 |
tcataaaaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatggcacgaatagtgtagagtt |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44001740 |
tcatataaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatggcacgaatagtgtacagtt |
44001641 |
T |
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| Q |
201 |
tagtccaagactctttaattccatattcct |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
44001640 |
tagtccaagactctttaattccatattcct |
44001611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 43992195 - 43992065
Alignment:
| Q |
11 |
atccaaccattgatgttttgaatcattgggaattttaa-agtaccaattttggaatcacaaacacccaactccattttggaacttgtcctctcataaaaa |
109 |
Q |
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| T |
43992195 |
atccaaccattggtgttttgaatc-tcaggaatcttcagagtaccatttttggaatcgtaaacagccaacgtcaattcggaacttgtcaattcataaaaa |
43992097 |
T |
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| Q |
110 |
tcaattagaaattgatcatcctcagaaatata |
141 |
Q |
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| T |
43992096 |
tcaattaacacttaatcatcctcagaaatata |
43992065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 12218226 - 12218122
Alignment:
| Q |
47 |
aaagtaccaattttggaatcacaaacacccaactccattttggaacttgtcctctcataaaaatcaattagaaattgatcatcctcagaaatatatacaa |
146 |
Q |
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|||||||||||||||||| || ||||| |||||| | ||||| |||| | |||||||||||| | || ||||||||||||||||||| || || || |
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| T |
12218226 |
aaagtaccaattttggaaccataaacaaccaacttctttttgttacttcccagctcataaaaatccaacagcaattgatcatcctcagaaacatgtaaaa |
12218127 |
T |
|
| Q |
147 |
ccttg |
151 |
Q |
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||||| |
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| T |
12218126 |
ccttg |
12218122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 997625 - 997592
Alignment:
| Q |
197 |
agtttagtccaagactctttaattccatattcct |
230 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
997625 |
agtttagtccaagactctttatttccatattcct |
997592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 1014015 - 1013982
Alignment:
| Q |
197 |
agtttagtccaagactctttaattccatattcct |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
1014015 |
agtttagtccaagactctttatttccatattcct |
1013982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 4142125 - 4142169
Alignment:
| Q |
186 |
gaatagtgtagagtttagtccaagactctttaattccatattcct |
230 |
Q |
| |
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|||||||| | | ||||||||||||||||||| |||||||||||| |
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| T |
4142125 |
gaatagtgaacaatttagtccaagactctttatttccatattcct |
4142169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 20293042 - 20293011
Alignment:
| Q |
199 |
tttagtccaagactctttaattccatattcct |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20293042 |
tttagtccaagactctttaattccatattcct |
20293011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 20305903 - 20305872
Alignment:
| Q |
199 |
tttagtccaagactctttaattccatattcct |
230 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
20305903 |
tttagtccaagactctttaattccatattcct |
20305872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 20310307 - 20310276
Alignment:
| Q |
199 |
tttagtccaagactctttaattccatattcct |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
20310307 |
tttagtccaagactctttaattccatattcct |
20310276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 17362301 - 17362245
Alignment:
| Q |
16 |
accattgatgttttgaatcattgggaattttaaagtaccaattttggaatcacaaac |
72 |
Q |
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||||| ||||||||||||| |||| || || ||||||||| ||||| |||||||||| |
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| T |
17362301 |
accatcgatgttttgaatctttggaaacttaaaagtaccatttttgaaatcacaaac |
17362245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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