View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_28 (Length: 245)
Name: NF6447_low_28
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_28 |
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| [»] scaffold0006 (3 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 131229 - 131480
Alignment:
| Q |
1 |
ttcaagtattcgctctctgtggttcgtggactctgtttccctcattataaaattcatattgcatatcattcctt-------------------taaattg |
81 |
Q |
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| T |
131229 |
ttcaagtattcactctctgtggttcgtggactctgtttcccttattattaaattcatattgcatatcattccttcaagaatagaataaagttttaaattg |
131328 |
T |
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| Q |
82 |
atacttgcacctaaatcagacaaggcttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcgctctaaaattgtattaata |
181 |
Q |
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| T |
131329 |
atacttgcgcctaaatcagacaagacttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcactctaaaattgtattaata |
131428 |
T |
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| Q |
182 |
ttatatttgaaaatgttgttgttgtttattgaattacatttgaaggttgtctgtg |
236 |
Q |
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| T |
131429 |
ttatatttgaaaa---tgttgttgtttattgaattactgttgaaagttgtctgtg |
131480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 160265 - 160304
Alignment:
| Q |
169 |
aattgtattaatattatatttgaaaatgttgttgttgttt |
208 |
Q |
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| T |
160265 |
aattgtattaatattatatttgaaaatattgttgttgttt |
160304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 161852 - 161892
Alignment:
| Q |
169 |
aattgtattaatattatatttgaaaatgttgttgttgttta |
209 |
Q |
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| T |
161852 |
aattgcattaatattataattgaaaatgttgttgttgttta |
161892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13602572 - 13602823
Alignment:
| Q |
1 |
ttcaagtattcgctctctgtggttcgtggactctgtttccctcattataaaattcatattgcatatcattcctt-------------------taaattg |
81 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
13602572 |
ttcaagtattcactctctgtggttcgtggactctgtttcccttattattaaattcatattgcatatcattccttcaagaatagaataaagttttaaattg |
13602671 |
T |
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| Q |
82 |
atacttgcacctaaatcagacaaggcttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcgctctaaaattgtattaata |
181 |
Q |
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| T |
13602672 |
atacttgcgcctaaatcagacaagacttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcactctaaaattgtattaata |
13602771 |
T |
|
| Q |
182 |
ttatatttgaaaatgttgttgttgtttattgaattacatttgaaggttgtctgtg |
236 |
Q |
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| T |
13602772 |
ttatatttgaaaa---tgttgttgtttattgaattactgttgaaagttgtctgtg |
13602823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 13572751 - 13572791
Alignment:
| Q |
169 |
aattgtattaatattatatttgaaaatgttgttgttgttta |
209 |
Q |
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||||| |||||| |||||||||||||||||||||||||||| |
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| T |
13572751 |
aattgcattaattttatatttgaaaatgttgttgttgttta |
13572791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 13492274 - 13492313
Alignment:
| Q |
169 |
aattgtattaatattatatttgaaaatgttgttgttgttt |
208 |
Q |
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| T |
13492274 |
aattgcattaatattatatttgaaaatgttgtttttgttt |
13492313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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