View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6447_low_29 (Length: 244)

Name: NF6447_low_29
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6447_low_29
NF6447_low_29
[»] chr7 (2 HSPs)
chr7 (168-235)||(5984277-5984344)
chr7 (1-47)||(5984469-5984515)
[»] chr2 (1 HSPs)
chr2 (12-59)||(9838389-9838436)
[»] chr4 (2 HSPs)
chr4 (15-59)||(8625077-8625121)
chr4 (19-59)||(22136711-22136751)
[»] chr8 (1 HSPs)
chr8 (172-227)||(8544775-8544830)
[»] chr6 (1 HSPs)
chr6 (11-59)||(12392671-12392719)
[»] chr3 (2 HSPs)
chr3 (11-59)||(12998024-12998072)
chr3 (11-59)||(47730298-47730346)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 5984344 - 5984277
Alignment:
Q  168 ctttcacaattgattagaggtaaccgttttttaacggatgtcgtgggatgctaatacttttcctatgc 235  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5984344 ctttcacaattaattagaggtaaccgttttttaacggatgtcatgggatgctaatacttttcctatgc 5984277  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5984515 - 5984469
Alignment:
Q  1 cgcatcgggtgatacgtaggagcaagatcaaactcttgtcaaacaca 47  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  5984515 cgcatcggatgatacgtaggagcaagatcaaactcttgacaaacaca 5984469  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9838436 - 9838389
Alignment:
Q  12 atacgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  9838436 atacgtaggagcaagatcgaactcttgtcaaacacaataataacaaaa 9838389  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 8625121 - 8625077
Alignment:
Q  15 cgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  8625121 cgtaggagcaagatcaaattcttgtcaaacacaataataacaaaa 8625077  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 22136751 - 22136711
Alignment:
Q  19 ggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  22136751 ggagcaagatctcactcttgtcaaacacaataataacaaaa 22136711  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 8544830 - 8544775
Alignment:
Q  172 cacaattgattagaggtaaccgttttttaacggatgtcgtgggatgctaatacttt 227  Q
    ||||||| ||||||| | ||| |||||||| |||||||||||||||||||||||||    
T  8544830 cacaattaattagagatgaccattttttaatggatgtcgtgggatgctaatacttt 8544775  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 12392671 - 12392719
Alignment:
Q  11 gatacgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  12392671 gatacgtaggagcaagatgaaactcttgtcaagcacaataataaaaaaa 12392719  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 12998072 - 12998024
Alignment:
Q  11 gatacgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  12998072 gatacgtaggagcaagatgaaactcttgtcaagcacaataataaaaaaa 12998024  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 47730298 - 47730346
Alignment:
Q  11 gatacgtaggagcaagatcaaactcttgtcaaacacagtaataacaaaa 59  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  47730298 gatacgtaggagcaagatgaaactcttgtcaagcacaataataaaaaaa 47730346  T

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