View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_32 (Length: 241)
Name: NF6447_low_32
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 6560144 - 6560272
Alignment:
| Q |
102 |
attaatttcttttaattatactagtttttgttgcttcattattcacatctcaaagaacattaatagaaagagtgaagactactcaaacagatgtttctat |
201 |
Q |
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| T |
6560144 |
attaatttcttttaattatactagtttttgttgcttcattattcacatctctaagaacattaatagaaagagttaagactactcaaacagatgtttctat |
6560243 |
T |
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| Q |
202 |
ctatggaaatcgatcaaccgatgatgatg |
230 |
Q |
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| T |
6560244 |
ctatggaaatcgatcaaccgatgatgatg |
6560272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6560005 - 6560109
Alignment:
| Q |
1 |
ttgaaaatcaatttccagcctgtttaagaagcggaaacatgccatttttagtaacaaatacaaagatgattaaggaatatatataatctaacaaatggaa |
100 |
Q |
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| T |
6560005 |
ttgaaaatcaatttccagcctgtttaagaagcggaaacatgccatttttagtaacaaatacaaagatgattaaggaatatatataatctaacaaatggaa |
6560104 |
T |
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| Q |
101 |
catta |
105 |
Q |
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| T |
6560105 |
catta |
6560109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 8690468 - 8690507
Alignment:
| Q |
33 |
ggaaacatgccatttttagtaacaaatacaaagatgatta |
72 |
Q |
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| T |
8690468 |
ggaaacatgtcatttttagtaacaaatacaaggatgatta |
8690507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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