View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_35 (Length: 239)
Name: NF6447_low_35
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 52172967 - 52173122
Alignment:
| Q |
73 |
actaactcacaattatgtcataatgaacctctaatatccatccttaacattgttaat-----gttgataatgcttacttctactctatagcgagttactc |
167 |
Q |
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| T |
52172967 |
actaactcacaattatgtcataatgaacctctaatatccatccttaacattgttaatcaatggttgataatgcttacttcaactctatagtgagttactc |
52173066 |
T |
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| Q |
168 |
actctagaggagtctggtcatttattttcctatgtaaataaattatgggctgtttc |
223 |
Q |
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| T |
52173067 |
actctagaggagtctggtcatttattttcctatgtaaataaattatgggttgtttc |
52173122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52172890 - 52172938
Alignment:
| Q |
1 |
tacatttgaacctattttgaatttagctctctaaaatgagaaaatcacg |
49 |
Q |
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| T |
52172890 |
tacatttgaacctattttgaatttagctctctaaaatgagaaaatcacg |
52172938 |
T |
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