View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_39 (Length: 237)
Name: NF6447_low_39
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 38 - 233
Target Start/End: Original strand, 7722892 - 7723087
Alignment:
| Q |
38 |
caaattccaatctccatatatatattttatgtaatgtctctaccaatctagcgaaactcgcaaactttatttttaagcactaaactcacaaacttctatt |
137 |
Q |
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| T |
7722892 |
caaatttcaatctccatatgtatattttatataatgtccctaccaatctagcgaaactcgcaaactttatttttaagctctaaactcacaaacttctatt |
7722991 |
T |
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| Q |
138 |
tcgttatttatgtatcgattacctttaattattttccattctttttggtacagccttcgtcatgcatcaaaatatgtatgtcatcagcagtataat |
233 |
Q |
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| T |
7722992 |
tcgttatttatgtatcgattacctttaattattttccattctttttggtacagccttcgtcatgcattaaaaaatgtgtgccgtcagcagtataat |
7723087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 7729206 - 7729307
Alignment:
| Q |
132 |
tctatttcgttatttatgtatcgat-tacctttaattattttccattctttttggtacagccttcgtcatgcatcaaaatatgtatgtcatcagcagtat |
230 |
Q |
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| T |
7729206 |
tctatttagttatttatgtatcgatatacctttaattgttttccattctttt-ggtatagccttcgtcatgcatcaaaaaatgtatgccgccagcagtat |
7729304 |
T |
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| Q |
231 |
aat |
233 |
Q |
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||| |
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| T |
7729305 |
aat |
7729307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 7715288 - 7715352
Alignment:
| Q |
131 |
ttctatttcgttatttatgtatcgat-tacctttaattattttccattctttttggtacagcctt |
194 |
Q |
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| T |
7715288 |
ttctgtttagttatttatgtatcgatatacctttaattattttccattctttttggcatagcctt |
7715352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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