View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_4 (Length: 565)
Name: NF6447_low_4
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 107 - 556
Target Start/End: Original strand, 25513740 - 25514193
Alignment:
| Q |
107 |
gggagaatgtaatgttaccataagggtatgttggacccgatcttgatggtaattatgttgaacaaaaaccataaccaaaccgacaacagaaaatgctcca |
206 |
Q |
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| T |
25513740 |
gggagaatgtaatgttaccataagggtatgttggacccgatcttgatggtaattatgttgaacaaaaaccataaccaaaccgacaacagaaaatgctcca |
25513839 |
T |
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| Q |
207 |
agaagaaaacagatcccataagacaactttcgtcgaatcgggcgccgaaactcggcagcccgacgccccatttcctccttcttccacaacaacaaaaata |
306 |
Q |
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| T |
25513840 |
agaagaaaacagatcccataagacaactttcgtcgaatcgggcgccgaaactcggcagcccgacgccccatttcctccttcttccaccacaacaaaaaca |
25513939 |
T |
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| Q |
307 |
actactcagctcaaaatttaaaatcaacaaaaacccatgatttttatttcatcaatgaatcatatgaatatatctttgtcttg----tatatataataac |
402 |
Q |
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| T |
25513940 |
actactcagctcaaaattcaaaatcaacaaaaacccatgatttttatttcatcaatgaatcatatgaatatatctttgtcttgtatatatatataataac |
25514039 |
T |
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| Q |
403 |
caatgttcttcactcactcttttactcactaggcgttacttgtgaaagaagtgagagcnnnnnnnnnnnnntaattaaatgatgatgagatcatcaaaca |
502 |
Q |
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| T |
25514040 |
caatgctcttcactcactcttttactcactaggcgttacttgtgaaagaagtgagagcaaaaaaacaaatataattaaatgatgatgagatcatcaaaca |
25514139 |
T |
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| Q |
503 |
tgaatttctgtgagtaaatagtgacagtaaaatttgagtatagtagagaataat |
556 |
Q |
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| T |
25514140 |
tgaatttctgtgagtaaatagtgacagtaaaaattgagtatagtagagaataat |
25514193 |
T |
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