View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6447_low_40 (Length: 232)
Name: NF6447_low_40
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 5982698 - 5982808
Alignment:
| Q |
101 |
tacagcgcatgcttcataaaactcttatcacatcgtaaagtatatgcatgctggcctcctctacgtacgtcaaattaaaggacactagcctttaattcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5982698 |
tacagcgcatgcttcataaaactcttatcacatcgtaaagtatatgcatgctggcctcctctacgtacgtcaaattaaagtacactagcctttaattcac |
5982797 |
T |
|
| Q |
201 |
caggatgtagt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
5982798 |
caggatgtagt |
5982808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 5947065 - 5947131
Alignment:
| Q |
144 |
atgcatgctggcctcctctacgtacgtcaaattaaaggacactagcctttaattcaccaggatgtag |
210 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
5947065 |
atgcatgctggcctcctctacctaggtcaaattaaaggacactagcctttaattgacaaagatgtag |
5947131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University