View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_6 (Length: 472)
Name: NF6447_low_6
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 34957931 - 34957490
Alignment:
| Q |
14 |
atatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaactagcgtgattgcatgtacagagaacacacta |
113 |
Q |
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| T |
34957931 |
atatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaactagcgtgattgcatgtacagagaacacacta |
34957832 |
T |
|
| Q |
114 |
atgtaatatggtttggtgacacacaatctttaagcatttgatttgaccgtgccattcataagcacgaacgtgcgcatgaaattaggcattatttccccag |
213 |
Q |
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| T |
34957831 |
atgtaatatggtttggtgacacgcaatctttaagcatttgatttgaccgtgccattcataagcacgaccgtgcgcatgaaattaggcattatttccccag |
34957732 |
T |
|
| Q |
214 |
aattatagtaagttatcacacggccgtgccaaaataccgcacggtcttgcgtctgttcagaccaatatttcttcctgagctaccactgaggagtatactg |
313 |
Q |
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| T |
34957731 |
aattacagtaagttatcgcacggccgtgccaaaataccgcacggtcgtgcgtctgtccagaccaatatttcttcctgagctaccactgagaagtatactg |
34957632 |
T |
|
| Q |
314 |
agttgtatcataatgtattaaaaaacagcaaacacgaaagagagtcctcgtattcagcaagcatataccattataaatcctttaatatgataaagaaagt |
413 |
Q |
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| T |
34957631 |
agttgtatcataatgtatt-aaaagcagcaaacacgaaagagagtcctagtattcagcaagcatatacaattataaatcctttaatatgataaagaaagt |
34957533 |
T |
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| Q |
414 |
cttatacatatctttaattttaaagacggcataaattaacaat |
456 |
Q |
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| T |
34957532 |
cttatacatatctttaagtttaaagactgcataaatcaacaat |
34957490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 50131707 - 50131772
Alignment:
| Q |
16 |
atcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaa |
81 |
Q |
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| T |
50131707 |
atcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaa |
50131772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 50131794 - 50131874
Alignment:
| Q |
78 |
caaactagcgtgattgcatgtacagagaacac--actaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
156 |
Q |
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| T |
50131794 |
caaaccagcatgattacatgcacagagaacactgactaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
50131874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 44213194 - 44213158
Alignment:
| Q |
403 |
ataaagaaagtcttatacatatctttaattttaaaga |
439 |
Q |
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||||||||||||||||||||| |||||| |||||||| |
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| T |
44213194 |
ataaagaaagtcttatacatacctttaagtttaaaga |
44213158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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