View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_7 (Length: 417)
Name: NF6447_low_7
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 51546836 - 51546454
Alignment:
| Q |
18 |
tgagatgaagagttttgatgaattgaagcatacttcaggatatggagtagttctgcagaaggattttattgaagagatttttgcatgcaatgttgttgag |
117 |
Q |
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| T |
51546836 |
tgagatggagagttttgatgaattgaagcatacttcaggatatggagtatttctgcagaaggattttattgaagagatttttgcatgcaatgttgttgag |
51546737 |
T |
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| Q |
118 |
gaagaagtggtgttgttgaaagctgaagtgggtgaatggaagattgttaagagaagaagaaagagtttagaagataaattagccatgaattaacttgtat |
217 |
Q |
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| T |
51546736 |
gaagaagtggtgttgttgaaagctgaagtgggtgaatggaagattgttaagagaagaagaaagagtttagaagataaattagccatgaattaacttgtat |
51546637 |
T |
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| Q |
218 |
aataagaaatatttttgttgaaatgtattcacatctcaaagtttgagaattttagtacttgattaattcactcctttaaataatgtactatatggacatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51546636 |
aataagaaatatttttgttgaaatgtattcacatctcacagtttgagaattttagtacttgattaattcactcctttaaataatgtactctatggacatt |
51546537 |
T |
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| Q |
318 |
gattagggtgtgactatacaatatactgattttcatagaattatgctttaggtgagtcacatgttttgtttttacatgaagac |
400 |
Q |
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| T |
51546536 |
gattagggtgtgactatacaatatactgattttcatagaattatgctttaggtgagtcacatgttttgtttttacatgaagac |
51546454 |
T |
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