View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6447_low_8 (Length: 409)

Name: NF6447_low_8
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6447_low_8
NF6447_low_8
[»] chr1 (3 HSPs)
chr1 (1-392)||(11663631-11664022)
chr1 (1-143)||(38511146-38511288)
chr1 (167-283)||(38510967-38511084)
[»] chr8 (2 HSPs)
chr8 (51-392)||(13767684-13768022)
chr8 (1-98)||(13767589-13767686)
[»] chr4 (8 HSPs)
chr4 (163-392)||(35913685-35913914)
chr4 (1-138)||(35913915-35914052)
chr4 (1-142)||(45355953-45356094)
chr4 (1-142)||(45369694-45369835)
chr4 (167-244)||(45355820-45355895)
chr4 (167-244)||(45369561-45369636)
chr4 (226-298)||(45355615-45355689)
chr4 (226-298)||(45369356-45369430)
[»] chr5 (4 HSPs)
chr5 (1-162)||(17901650-17901813)
chr5 (41-146)||(18928201-18928304)
chr5 (167-298)||(17901851-17901969)
chr5 (305-392)||(17901991-17902080)
[»] chr2 (1 HSPs)
chr2 (42-70)||(41213244-41213272)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 11663631 - 11664022
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  11663631 tgttcaaaaaatatgtttggttgaaaatttaagttcctgggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttgataata 11663730  T
Q  101 gagatgtgtcttcagttttctctattatttcaaattattactgttcttatcagtaaacaatcaaattatttgatagttttatttcatacatcaattcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11663731 gagatgtgtcttcagttttctctattatttcaaattattactgttcttatcagtgaacaatcaaattatttgatagttttatttcatacatcaattcatc 11663830  T
Q  201 tatgttttcttttattgatgcaatcaacatataatatgacttgtaataatagaaaaaacaatgtgacatttattgctccaataaaagtgcaccgcctaaa 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11663831 tatgttttcttttattgatgcaatcaaaatataatatgacttgtaataatagaaaaaacaatgtgacatttattgttccaataaaagtgcaccgcctaaa 11663930  T
Q  301 catccaaatattaaaaggcgtatgatctgtcccatgacaaaattagtgctgagaagaaaaaagtctgagtggcacataaattggtgtataaa 392  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  11663931 catccaaatattaaaagtcgtatgatctgtcccatggcaaaattagtgcagagaagaaaaaattctgagtggcacataaattggtgtataaa 11664022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38511288 - 38511146
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatg 100  Q
    |||||||||||||||||| ||||| ||||| |  |||| | ||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |||      
T  38511288 tgttcaaaaaatatgttttgttgataatttgaaatcctggaaattatttttaaaaattatatataataatcaaaatacccttatattatatttgataaaa 38511189  T
Q  101 gagatgtgtcttcagttttctctattatttcaaattattactg 143  Q
    ||||  |||||||||||||||||||||||||| ||||||||||    
T  38511188 gagaaatgtcttcagttttctctattatttcatattattactg 38511146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 38511084 - 38510967
Alignment:
Q  167 tatttgatagttttatttcatacatcaattcatctatg--ttttcttttattgatgcaatcaacatataatatgac--ttgtaataatagaaaaaacaat 262  Q
    |||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| || |||||||||  |||||||||||| ||||| |||    
T  38511084 tattcgatagttttatttcatacatcaattcatctatgtttttttttttattgatgcaatcaa-at-taatatgacttttgtaataatag-aaaaataat 38510988  T
Q  263 gtgacatttattgctccaata 283  Q
     |||||||||||| |||||||    
T  38510987 atgacatttattgttccaata 38510967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 51 - 392
Target Start/End: Original strand, 13767684 - 13768022
Alignment:
Q  51 taaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattactgttcttat 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13767684 taaaaaaaatatataattatcaaaatacccttatatcatatttggtaatagagatgtgtcttcatttttctctattatttcaaattattactgttcttat 13767783  T
Q  151 cagtaaacaatcaaattatttgatagttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaacatataatatgacttgtaataat 250  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||    
T  13767784 cagtgaacaatcaaattatttgatagttttatttcatacatcaattcatctatg---------attgatgcaatcaaaatataatatgacttgtaataat 13767874  T
Q  251 agaaaaaacaatgtgacatttattgctccaataaaagtgcaccgcctaaacatccaaatattaaaaggcgtatgatctgtcccatgacaaaattagtgc- 349  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||     
T  13767875 agaaaaaacaatgtgacctttattgttccaataaaagtgtaccgcctaaacatccaaatattaaaagtcgtatgatctgtcccatggcaaaattagtgca 13767974  T
Q  350 -----tgagaagaaaaaagtctgagtggcacataaattggtgtataaa 392  Q
          |||||||||||| |||||||||||||||||||||||||||||    
T  13767975 gagaaggagaagaaaaaattctgagtggcacataaattggtgtataaa 13768022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13767589 - 13767686
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaa 98  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13767589 tgttcaaaaaatatgtttggttgaaaatttaagttcctgagaattatttttaaaaaaaatatataattatcaaaatacccttatatcatatttggtaa 13767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 163 - 392
Target Start/End: Complemental strand, 35913914 - 35913685
Alignment:
Q  163 aaattatttgatagttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaacatataatatgacttgtaataatagaaaaaacaat 262  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35913914 aaattatttgatacttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaaaatataatatgacttgtaataatagaaaaaacaat 35913815  T
Q  263 gtgacatttattgctccaataaaagtgcaccgcctaaacatccaaatattaaaaggcgtatgatctgtcccatgacaaaattagtgctgagaagaaaaaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  35913814 gtgacatttattgctccaataaaagtgcaccgcctaaacatccaaatattaaaagtcgtatgatctgtcccatggcaaaattagtgcagagaagaaaaaa 35913715  T
Q  363 gtctgagtggcacataaattggtgtataaa 392  Q
     | |||||||||||||||||||||||||||    
T  35913714 ttatgagtggcacataaattggtgtataaa 35913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35914052 - 35913915
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatg 100  Q
    |||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35914052 tgttcaaaaactacgtttggttgaaaatttaagttcctggaaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaata 35913953  T
Q  101 gagatgtgtcttcagttttctctattatttcaaattat 138  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35913952 gagatgtgtcttcaattttctctattatttcaaattat 35913915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 45356094 - 45355953
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatg 100  Q
    |||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  45356094 tgttcaaaaaatatgtttggttgataatttgaattcctgggaattatttttaaaatatatatataattatcaaaatacccttgtatcatatttggtaaag 45355995  T
Q  101 gagatgtgtcttcagttttctctattatttcaaattattact 142  Q
    |||| ||||||| ||||||||||||||||| |||||||||||    
T  45355994 gagacgtgtctttagttttctctattattttaaattattact 45355953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 45369835 - 45369694
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatg 100  Q
    |||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  45369835 tgttcaaaaaatatgtttggttgataatttgaattcctgggaattatttttaaaatatatatataattatcaaaatacccttgtatcatatttggtaaag 45369736  T
Q  101 gagatgtgtcttcagttttctctattatttcaaattattact 142  Q
    |||| ||||||| ||||||||||||||||| |||||||||||    
T  45369735 gagacgtgtctttagttttctctattattttaaattattact 45369694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 45355895 - 45355820
Alignment:
Q  167 tatttgatagttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaacatataatatgacttgt 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  45355895 tatttgagagttttatttcatacatcaattcatctatgttttcttttattgatgcaatca--aaataatatgacttgt 45355820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 45369636 - 45369561
Alignment:
Q  167 tatttgatagttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaacatataatatgacttgt 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  45369636 tatttgagagttttatttcatacatcaattcatctatgttttcttttattgatgcaatca--aaataatatgacttgt 45369561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 45355689 - 45355615
Alignment:
Q  226 aacatataatatgactt--gtaataatagaaaaaacaatgtgacatttattgctccaataaaagtgcaccgccta 298  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  45355689 aacaaataatatgacttttgtaataatagaaaaaacaatatgacatttattgttccaataaaagtgcactgccta 45355615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 45369430 - 45369356
Alignment:
Q  226 aacatataatatgactt--gtaataatagaaaaaacaatgtgacatttattgctccaataaaagtgcaccgccta 298  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  45369430 aacaaataatatgacttttgtaataatagaaaaaacaatatgacatttattgttccaataaaagtgcactgccta 45369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 17901650 - 17901813
Alignment:
Q  1 tgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatat--atataattatcaaaatacccttatatcatatttggtaa 98  Q
    |||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| | |||    
T  17901650 tgttcaaaaaatatgtttggttgataatttgaattcctgggaattatttttaaaaaatatatatataattatcaaaatacccttatatcatattcgataa 17901749  T
Q  99 tggagatgtgtcttcagttttctctattatttcaaattattactgttcttatcagtaaacaatc 162  Q
      |||| ||||||||||||||||||||||||||| |||||||||  || ||||||| |||||||    
T  17901750 aagagaagtgtcttcagttttctctattatttcatattattactagtcatatcagtgaacaatc 17901813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 18928201 - 18928304
Alignment:
Q  41 gaattatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattatta 140  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||| |||| |||||||  ||| ||| |  || |  |||||||||||||||||||||||    
T  18928201 gaattatttttaaaatatatgtataattatcagaatacccttataccatagttggtaaaagag-tgtattgtctg-gttctctattatttcaaattatta 18928298  T
Q  141 ctgttc 146  Q
    ||||||    
T  18928299 ctgttc 18928304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 17901851 - 17901969
Alignment:
Q  167 tatttgatagttttatttcatacatcaattcatctatgttttcttttattgatgcaatcaacatataatatgact--tgtaataatagaaaaaacaatgt 264  Q
    ||||||||||||||||||||||||||||||||||||             |||||||||||  |  ||||||||||  ||||||||||||||||||||| |    
T  17901851 tatttgatagttttatttcatacatcaattcatcta-------------tgatgcaatca--aactaatatgacttctgtaataatagaaaaaacaatat 17901935  T
Q  265 gacatttattgctccaataaaagtgcaccgccta 298  Q
    || |||||||| |||||||||||| ||| |||||    
T  17901936 gaaatttattgttccaataaaagtccactgccta 17901969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 392
Target Start/End: Original strand, 17901991 - 17902080
Alignment:
Q  305 caaatattaaaaggcgtatgatctgtc-ccatgacaaaattagtgctgagaagaaaaaagt-ctgagtggcacataaattggtgtataaa 392  Q
    |||||||||||||  ||||||||| |  ||||| |||||| ||||| |||||||||||| | ||  ||||||||||||||||| ||||||    
T  17901991 caaatattaaaagttgtatgatctttttccatggcaaaatcagtgcagagaagaaaaaaattctaggtggcacataaattggtatataaa 17902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 41213244 - 41213272
Alignment:
Q  42 aattatttttaaaaaatatatataattat 70  Q
    |||||||||||||||||||||||||||||    
T  41213244 aattatttttaaaaaatatatataattat 41213272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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