View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6447_low_9 (Length: 400)
Name: NF6447_low_9
Description: NF6447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6447_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 33121355 - 33120998
Alignment:
| Q |
17 |
cctttaaattttttgtttgaatgattttttgtctcacaagcaatccaaaccaaaccgtatcgcttatgaaaatgttggggagatacaattctaaaaagaa |
116 |
Q |
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| T |
33121355 |
cctttaaattttttgtttgaatgattttttgtctcacaaccaatccaaaccaaaccgtatcgtttatgaaaatattggggagatacaattctaaaaag-- |
33121258 |
T |
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| Q |
117 |
atatgaaagtaactatatatagtaattttgtctcaagaatcatatattcaaatgtttataagtttaaaaattgctattttcaatattaaatctctacttt |
216 |
Q |
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| T |
33121257 |
---------taactatatatagtaattttgtctcaagaatcatatattcaaatgtttagaagtttaaaaattgctattttcaatattaaatctctacttt |
33121167 |
T |
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| Q |
217 |
taatagaatccgccaagcttgagacttgggagaccgtaaaacctctttcatcgaagcaagagagaaatggggagtgacttggtgctggaagagaaggaga |
316 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33121166 |
taatagaaaccgccaagcttgagatttgggagaccgtaaaacctctttcatcgaagcaagagagaaatggggagtgacttggtgctggaagagaaggaga |
33121067 |
T |
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| Q |
317 |
ggaagaagatattgcttgcaccagcttccgttgcttaacctc-tgctgcaaacaagcttttcaagaaaa |
384 |
Q |
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| T |
33121066 |
ggaagaagatattgcttgcaccagcttccgttgcttaacctcttgctgcaaacaagcttttcaagaaaa |
33120998 |
T |
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