View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6448_low_1 (Length: 546)
Name: NF6448_low_1
Description: NF6448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6448_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 248 - 530
Target Start/End: Complemental strand, 24065404 - 24065128
Alignment:
| Q |
248 |
aaaagaaaagagatagaaaaatgagaaggtaattttatgagaatgaaattacctagactcttggcatgtttgagtgagaaatcaagaacattcttagcat |
347 |
Q |
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| T |
24065404 |
aaaagaaaagagatagaaaaatgagaaggta------tgagaatgaaattacctagactcttggcatgtttgagtgagaaatcaagaacattcttagcat |
24065311 |
T |
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| Q |
348 |
caaaagtgaaccttatatctttacaagaaaaaccactgcaaccaccacctctaccaaccaacttcatcacttgctccctagtaacattaaaatcaattcc |
447 |
Q |
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| T |
24065310 |
caaaagtgaaccttatatctttacaagaaaaaccactgcaaccaccacctctaccaaccaacttcatcacttgctccctactaacattaaaatcaattcc |
24065211 |
T |
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| Q |
448 |
ataagacttaagaatttttgcagccaacccatttgaatcaccaaggataccaagtagtatatgttctgtgctaatgtatttat |
530 |
Q |
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| T |
24065210 |
ataagacttaagaatttttgcagccaacccatttgaatcaccaaggataccaagtagtatatgttctgtgctaatgtatttat |
24065128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 24065457 - 24065408
Alignment:
| Q |
5 |
acatcatcaaaataaataaacaagaacaactaaacatattcttttaaaat |
54 |
Q |
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| T |
24065457 |
acatcatcaaaataaataaaccagaacaactaaacatattcttttaaaat |
24065408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 24240509 - 24240560
Alignment:
| Q |
285 |
tgagaatgaaattacctagactcttggcatgtttgagtgagaaatcaagaac |
336 |
Q |
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| T |
24240509 |
tgaggatgaaattacctagagacatggcatgtttgagtgagaaatcaagaac |
24240560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 55204083 - 55203997
Alignment:
| Q |
10 |
atcaaaataaataaacaagaacaactaaacatattcttttaaaatttgaaattcttcgaacaaatcgtcaatttagtccttaaaatt |
96 |
Q |
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| T |
55204083 |
atcaaaataaataaacaagatcaaccaaatatattcttttaaaatttgaaattcttcgaacgaatagccaattttgtccttagaatt |
55203997 |
T |
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