View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6448_low_2 (Length: 383)
Name: NF6448_low_2
Description: NF6448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6448_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 41201011 - 41200692
Alignment:
| Q |
10 |
catcatcaaaggttcacaagaggcaaggatcacctcaaaaagcttcaatgttgtaaagatgaggcaagtgctcaaaacatgatactttcacgcacaaaca |
109 |
Q |
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| T |
41201011 |
catcatcaaaggttcacaagaggcaaggatcacctcaaaaagcttcaatgttgaaaagatgaggcaagtgctcaaaacatgatactttcacgcacaaaca |
41200912 |
T |
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| Q |
110 |
ctccatgccgtgcatacgaagtacaaataacacaagtttgaaaacgcgctaacttcgcgttcacagttttcaactttgaatacacgaagggaacataatg |
209 |
Q |
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| T |
41200911 |
ctccatgccgtgcatacgaagtacaaataacacaagtttgaaaacacgctaacttggcgttcacagttttcaactttgaatacacgaagggaacataatg |
41200812 |
T |
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| Q |
210 |
tgctttttctcacacattaaggtactttaagcttgttataaataattaattgtaaggcagatgaacctatacacttcaacaatcccttcaaaattgagca |
309 |
Q |
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| T |
41200811 |
tgctttttctcacacattaaggtactttaagcttgttattaataattaattgtaaggcagatgaacctatacacttcaacactcccttcaaaattgagca |
41200712 |
T |
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| Q |
310 |
taaggatacatggataaatt |
329 |
Q |
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| T |
41200711 |
taaggatacatggataaatt |
41200692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 41200639 - 41200598
Alignment:
| Q |
331 |
tggtaggttgtcttgtaatcagaggagttgttggagatgatg |
372 |
Q |
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| T |
41200639 |
tggtaggttgtcttgtaatcagaggagttgttggagatgatg |
41200598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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