View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6448_low_5 (Length: 225)
Name: NF6448_low_5
Description: NF6448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6448_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 15052933 - 15053126
Alignment:
| Q |
17 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctgcaatttcggaaataattcatttctttaaatttataagttta--gttgataa |
114 |
Q |
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| T |
15052933 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctacaatttctgaaacaatttatttctttaaatttataagtttatagttgataa |
15053032 |
T |
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| Q |
115 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaacc |
208 |
Q |
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| T |
15053033 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcatcaaaaataaaagagttaaatgccagcaaattcattcatttgaacc |
15053126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 15050768 - 15050818
Alignment:
| Q |
158 |
attcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaacc |
208 |
Q |
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| T |
15050768 |
attcatcaaaaataaaagaattaaaagccagaaaactcattcatttaaacc |
15050818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 15103656 - 15103606
Alignment:
| Q |
158 |
attcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaacc |
208 |
Q |
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| T |
15103656 |
attcatcaaaaataaaagaattaaaagccagaaaactcattcatttaaacc |
15103606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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