View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6449_high_12 (Length: 243)
Name: NF6449_high_12
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6449_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 43246102 - 43246309
Alignment:
| Q |
19 |
aatatcgatattatttattattacaccaagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggtcacactatagctc |
118 |
Q |
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| T |
43246102 |
aatatcgatattatttattattacaccaagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggttacactatagctc |
43246201 |
T |
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| Q |
119 |
atcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246202 |
ttcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgt |
43246301 |
T |
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| Q |
219 |
tactccta |
226 |
Q |
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|||||||| |
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| T |
43246302 |
tactccta |
43246309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 8532519 - 8532727
Alignment:
| Q |
29 |
ttatttattattacaccaagtcaccaattaatcaatgcaaaa----atcaaataaattttagtagtggccactttatt--ggtcacac-tatagct---- |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| || |
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| T |
8532519 |
ttatttattattacaccaagtcaccaattaatcaacgcaaattaagatcaaataaattttagtagaggctgctttattttggtcacatatata-ctgtat |
8532617 |
T |
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| Q |
118 |
-catcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctc |
216 |
Q |
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|||||| ||| | |||||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| |
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| T |
8532618 |
acatcttgatcggtttcaaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttctt |
8532717 |
T |
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| Q |
217 |
gttactccta |
226 |
Q |
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|||||||||| |
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| T |
8532718 |
gttactccta |
8532727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 8551391 - 8551493
Alignment:
| Q |
124 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
223 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
8551391 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactc |
8551490 |
T |
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| Q |
224 |
cta |
226 |
Q |
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||| |
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| T |
8551491 |
cta |
8551493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 8540896 - 8540997
Alignment:
| Q |
125 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
224 |
Q |
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|||||| | |||||||| ||||| |||||||| ||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
|
| Q |
225 |
ta |
226 |
Q |
| |
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|| |
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|
| T |
8540996 |
ta |
8540997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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