View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6449_high_2 (Length: 549)

Name: NF6449_high_2
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6449_high_2
NF6449_high_2
[»] chr7 (2 HSPs)
chr7 (1-543)||(28266304-28266848)
chr7 (169-205)||(31020716-31020752)
[»] chr6 (4 HSPs)
chr6 (153-218)||(34625716-34625781)
chr6 (171-218)||(34598538-34598585)
chr6 (166-205)||(14244052-14244091)
chr6 (180-212)||(7564182-7564214)
[»] chr4 (3 HSPs)
chr4 (163-218)||(12709995-12710050)
chr4 (171-212)||(32369930-32369971)
chr4 (163-195)||(22440635-22440667)
[»] chr8 (4 HSPs)
chr8 (171-212)||(2517107-2517148)
chr8 (176-219)||(29096951-29096994)
chr8 (172-218)||(1979413-1979459)
chr8 (179-212)||(10170404-10170437)
[»] chr5 (3 HSPs)
chr5 (163-219)||(18542221-18542278)
chr5 (171-226)||(9895147-9895202)
chr5 (181-226)||(28322251-28322296)
[»] chr3 (2 HSPs)
chr3 (168-219)||(49636837-49636888)
chr3 (176-212)||(36301998-36302034)
[»] chr2 (2 HSPs)
chr2 (177-218)||(5461181-5461222)
chr2 (174-211)||(5526792-5526829)
[»] scaffold0027 (1 HSPs)
scaffold0027 (172-204)||(145921-145953)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 28266304 - 28266848
Alignment:
Q  1 gtttcaggtactatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgcttagcttcctcgaagcttttaacccgtatcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  28266304 gtttcaggtactatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgcttagctgcctcgaagcttttaacctgtatcata 28266403  T
Q  101 ttttacgaagcactgacatgacacatacacggacccttgacacgactttgacacatgacatagatacatcgacaccggtaataatttgagaaaataaatt 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266404 ttttacgaagcactgacatgacacagacatggacccttgacacgactttgacacatgacatagatacatcgacaccggtaataatttgagaaaataaatt 28266503  T
Q  201 aattggatgtaaacacatgagttggtaccgatgcgtgtcggacacgggggcacaccta--atatcataagtgtctgtgcttcagagaccatattagaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  28266504 aattggatgtaaacacatgagttggtaccgatgcgtgtcggacacgggggcacacctataatatcataagtgtctgtgcttcagagaccatattagaaaa 28266603  T
Q  299 tggtgctcatttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaacatctgatagtcatggattagaaaagaatac 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266604 tggtgctcatttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaacatctgatagtcatggattagaaaagaatac 28266703  T
Q  399 gcatttaaagtgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtatacagatattttaattcacttcagagtgaatgctt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266704 gcatttaaagtgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtatacagatattttaattcacttcagagtgaatgctt 28266803  T
Q  499 tcctacctgttaccactctgatgtaaacatggtcatctctgctcc 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28266804 tcctacctgttaccactctgatgtaaacatggtcatctctgctcc 28266848  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 31020752 - 31020716
Alignment:
Q  169 tcgacaccggtaataatttgagaaaataaattaattg 205  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  31020752 tcgacaccggtaacaatttgagaaaatgaattaattg 31020716  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 34625716 - 34625781
Alignment:
Q  153 acatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 218  Q
    |||||| || ||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||    
T  34625716 acatgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 34598538 - 34598585
Alignment:
Q  171 gacaccggtaataatttgagaaaataaattaattggatgtaaacacat 218  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  34598538 gacaccgataataatttgagaaaatgaattaattggatgtaatcacat 34598585  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 14244091 - 14244052
Alignment:
Q  166 acatcgacaccggtaataatttgagaaaataaattaattg 205  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  14244091 acatcgacaccggtagtaatttgagaaaatgaattaattg 14244052  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
Q  180 aataatttgagaaaataaattaattggatgtaa 212  Q
    |||||||||||||||||||||||||| ||||||    
T  7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 12709995 - 12710050
Alignment:
Q  163 gatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 218  Q
    ||||| |||| | |||||||||||||||||||||||||||||| | ||||||||||    
T  12709995 gatacgtcgatatcggtaataatttgagaaaataaattaattgaacgtaaacacat 12710050  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
Q  171 gacaccggtaataatttgagaaaataaattaattggatgtaa 212  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 22440667 - 22440635
Alignment:
Q  163 gatacatcgacaccggtaataatttgagaaaat 195  Q
    ||||||||||||||| |||||||||||||||||    
T  22440667 gatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 2517107 - 2517148
Alignment:
Q  171 gacaccggtaataatttgagaaaataaattaattggatgtaa 212  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  2517107 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 29096951 - 29096994
Alignment:
Q  176 cggtaataatttgagaaaataaattaattggatgtaaacacatg 219  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  29096951 cggtaataatttaagaaaataaattaattgaatgtaatcacatg 29096994  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 1979413 - 1979459
Alignment:
Q  172 acaccggtaataatttgagaaaataaattaattggatgtaaacacat 218  Q
    |||||||||||||||||||||||| ||||||||  |||||| |||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaatcacat 1979459  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 10170437 - 10170404
Alignment:
Q  179 taataatttgagaaaataaattaattggatgtaa 212  Q
    ||||||||||||||||||||||||||| ||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 18542278 - 18542221
Alignment:
Q  163 gatacatcgacaccggtaataatttgagaaaata-aattaattggatgtaaacacatg 219  Q
    |||||||||||||| ||||||||||||||||||| || |||||| |||||| ||||||    
T  18542278 gatacatcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatg 18542221  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9895147 - 9895202
Alignment:
Q  171 gacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggt 226  Q
    |||||| |||||||||||||||||||||||| ||| | |||| |||||| ||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttggt 9895202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 28322251 - 28322296
Alignment:
Q  181 ataatttgagaaaataaattaattggatgtaaacacatgagttggt 226  Q
    ||||||||||||||| ||||||||| |||||| |||||| ||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggt 28322296  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 49636888 - 49636837
Alignment:
Q  168 atcgacaccggtaataatttgagaaaataaattaattggatgtaaacacatg 219  Q
    |||||| | ||||||||||||||||||| ||||||||| |||||| ||||||    
T  49636888 atcgactctggtaataatttgagaaaatgaattaattgaatgtaatcacatg 49636837  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
Q  176 cggtaataatttgagaaaataaattaattggatgtaa 212  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 5461222 - 5461181
Alignment:
Q  177 ggtaataatttgagaaaataaattaattggatgtaaacacat 218  Q
    ||||||||||||||| ||||||||||||| |||||| |||||    
T  5461222 ggtaataatttgagataataaattaattgaatgtaatcacat 5461181  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 5526829 - 5526792
Alignment:
Q  174 accggtaataatttgagaaaataaattaattggatgta 211  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  5526829 accggtaataatttgagaaaataaaataattgtatgta 5526792  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 145921 - 145953
Alignment:
Q  172 acaccggtaataatttgagaaaataaattaatt 204  Q
    |||||||||||| ||||||||||||||||||||    
T  145921 acaccggtaatagtttgagaaaataaattaatt 145953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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